Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.3e-169 597.8 285 100.0
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 1.4e-167 592.8 285 98.9
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 2.8e-152 542.0 285 88.4
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.8e-152 542.0 285 88.1
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 3.7e-152 541.6 284 87.3
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 8.2e-152 540.4 285 88.8
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 8.2e-152 540.4 285 88.8
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 1.4e-151 539.7 284 89.1
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 1.8e-151 539.3 285 87.4
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 3.1e-151 538.5 286 88.5
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 9.1e-151 537.0 284 87.3
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 2.0e-150 535.8 284 88.4
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 2.6e-150 535.4 283 88.0
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 3.4e-150 535.0 285 85.3
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 4.5e-150 534.6 285 87.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.5e-150 534.6 285 87.4
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 7.7e-150 533.9 285 87.4
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.0e-149 533.5 283 87.3
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.2e-149 532.3 285 87.4
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.4e-148 529.6 285 86.0
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.4e-148 529.6 288 86.8
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.9e-148 529.3 285 87.0
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 2.5e-148 528.9 285 86.7
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 86.3
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 7.2e-148 527.3 282 87.2
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 9.4e-148 526.9 284 87.3
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 9.4e-148 526.9 284 87.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 9.4e-148 526.9 284 84.9
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.6e-147 526.2 285 84.9
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 2.7e-147 525.4 285 85.3
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 2.7e-147 525.4 285 84.9
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.9
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 85.3
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 85.3
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.9
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.0e-146 523.5 284 87.0
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 2.3e-146 522.3 284 85.9
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 2.3e-146 522.3 285 85.3
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.3e-146 522.3 282 86.5
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 3.9e-146 521.5 285 84.2
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.6
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 1.5e-145 519.6 284 83.5
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.5e-145 519.6 284 84.9
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.6e-145 518.8 286 85.0
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 3.3e-145 518.5 289 84.8
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 3.3e-145 518.5 285 84.6
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 4.4e-145 518.1 281 85.1
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 4.4e-145 518.1 285 84.2
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 7.4e-145 517.3 282 84.8
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 9.7e-145 516.9 285 84.9
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 9.7e-145 516.9 285 84.6
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.7e-144 516.2 282 84.0
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 2.8e-144 515.4 285 84.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 2.8e-144 515.4 285 84.2
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.8e-144 515.4 285 84.2
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 83.1
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 8.2e-144 513.8 286 83.6
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 1.1e-143 513.5 284 84.2
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 1.4e-143 513.1 283 82.7
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 1.4e-143 513.1 284 84.2
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.4e-143 513.1 284 82.7
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 3.1e-143 511.9 287 84.0
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 1.2e-142 510.0 281 84.7
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.2e-142 510.0 284 82.7
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.0e-142 509.2 284 84.5
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 2.6e-142 508.8 285 83.2
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 3.4e-142 508.4 284 82.0
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 3.4e-142 508.4 273 85.0
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 4.5e-142 508.1 290 83.1
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.5e-142 508.1 288 83.0
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 5.9e-142 507.7 285 83.5
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 7.7e-142 507.3 284 84.5
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 2.9e-141 505.4 280 84.6
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 3.8e-141 505.0 285 81.4
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 5.0e-141 504.6 285 81.8
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 3.2e-140 501.9 285 82.1
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 9.4e-140 500.4 285 81.8
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.2e-139 500.0 285 82.1
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 6.1e-139 497.7 283 82.3
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 6.1e-139 497.7 283 82.7
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 6.1e-139 497.7 280 82.1
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 8.0e-139 497.3 285 81.1
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.8e-138 496.1 285 80.7
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.8e-138 496.1 286 82.5
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.8e-138 496.1 286 82.5
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.3e-138 495.7 285 80.4
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 2.3e-138 495.7 285 81.1
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.3e-138 495.7 285 80.4
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 3.9e-138 495.0 285 80.7
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 5.2e-138 494.6 285 83.2
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 6.7e-138 494.2 302 77.5
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.1e-137 493.4 298 79.9
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.5e-137 493.0 279 82.8
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 3.3e-137 491.9 286 82.2
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 4.4e-137 491.5 286 81.8
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 9.7e-137 490.3 279 82.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.3e-136 490.0 279 79.2
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.2e-136 489.2 285 80.7
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 1.4e-135 486.5 271 82.7
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 1.6e-134 483.0 284 78.2
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 7.7e-134 480.7 284 78.9
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.0e-133 480.3 329 70.2
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.2e-133 479.2 278 81.3
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 6.1e-131 471.1 277 78.3
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.0e-130 470.3 282 79.1
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 9.7e-129 463.8 247 87.4
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.3e-128 463.4 280 76.4
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 4.1e-127 458.4 276 76.1
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 1.9e-124 449.5 284 73.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 4.4e-121 438.3 275 75.3
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.8e-120 435.6 287 75.3
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.4e-119 432.6 236 85.2
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 3.1e-119 432.2 234 84.2
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 8.6e-117 424.1 282 69.5
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 4.0e-114 415.2 225 86.7
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 5.4e-111 404.8 281 67.6
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 1.4e-106 390.2 284 66.2
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 2.6e-105 386.0 278 66.2
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 4.4e-105 385.2 196 90.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 5.0e-101 371.7 219 78.5
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 1.2e-91 340.5 283 58.3
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.7e-91 338.6 289 60.2
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 3.1e-90 335.9 273 62.6
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 9.2e-79 297.7 171 83.6
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 6.0e-78 295.0 167 83.8
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 2.8e-75 286.2 309 48.2
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-65 254.2 273 48.0
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 3.9e-61 239.2 277 46.2
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 3.9e-61 239.2 278 47.8
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 2.8e-59 233.0 229 52.4
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 8.2e-51 204.9 114 80.7
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 7.4e-44 181.8 103 78.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 3.9e-21 106.3 78 64.1
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 2.5e-15 87.0 78 53.8
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 2.3e-13 80.5 71 56.3
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 1.5e-12 77.8 79 48.1
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 1.6e-06 57.8 47 66.0


User provided reference genes

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