Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 3.6e-163 578.2 290 100.0
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 3.4e-153 545.0 290 95.5
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 8.7e-101 370.9 299 65.2
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.1e-100 370.5 296 65.9
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 2.8e-99 365.9 297 64.6
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 2.8e-99 365.9 299 64.2
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 4.8e-99 365.2 286 65.7
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.1e-98 364.0 294 65.0
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 1.8e-98 363.2 299 65.6
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 5.3e-98 361.7 284 65.1
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 9.0e-98 360.9 290 64.5
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 9.0e-98 360.9 296 64.5
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.2e-97 360.5 285 65.6
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.2e-97 360.5 286 65.0
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 7.7e-97 357.8 294 64.3
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.0e-96 357.5 291 62.5
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.3e-96 357.1 296 63.9
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.3e-96 357.1 288 63.9
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.2e-96 356.3 224 77.7
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 2.9e-96 355.9 220 75.0
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 3.8e-96 355.5 293 62.8
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 5.0e-96 355.1 282 63.1
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.5e-96 354.8 282 63.5
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.5e-96 354.8 282 63.5
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 8.5e-96 354.4 301 61.1
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.4e-95 353.6 290 62.8
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.9e-95 353.2 282 63.1
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 3.2e-95 352.4 295 62.4
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 5.5e-95 351.7 280 63.2
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 5.5e-95 351.7 304 63.5
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 9.4e-95 350.9 264 64.8
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.4e-95 350.9 282 62.8
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.2e-94 350.5 328 58.8
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 2.1e-94 349.7 296 60.8
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.7e-94 349.4 272 64.3
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 3.6e-94 349.0 295 62.0
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 4.6e-94 348.6 216 76.4
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.4e-93 347.1 279 63.1
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 1.4e-93 347.1 269 63.2
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 1.8e-93 346.7 301 59.5
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.8e-93 346.7 296 61.8
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 3.0e-93 345.9 303 59.7
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 5.1e-93 345.1 296 60.1
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 6.7e-93 344.7 252 68.7
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 8.8e-93 344.4 267 66.3
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 2.0e-92 343.2 306 58.8
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 2.0e-92 343.2 284 62.7
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 2.0e-92 343.2 306 59.8
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.6e-92 342.8 240 70.4
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 3.3e-92 342.4 283 62.9
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.3e-91 340.5 272 64.3
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.3e-91 340.5 290 61.0
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.3e-91 340.5 290 61.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 2.2e-91 339.7 295 59.3
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 2.2e-91 339.7 272 62.9
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.2e-91 339.7 233 70.4
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.7e-91 339.0 302 58.9
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 6.3e-91 338.2 296 59.5
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 6.3e-91 338.2 289 61.6
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 1.4e-90 337.0 289 61.2
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.4e-90 337.0 296 59.8
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.4e-90 337.0 296 59.8
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 1.4e-90 337.0 275 63.3
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.4e-90 337.0 307 59.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.8e-90 336.7 217 72.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 2.4e-90 336.3 220 71.4
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 5.3e-90 335.1 302 58.9
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 5.3e-90 335.1 289 61.9
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.5e-89 333.6 248 66.1
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.5e-89 333.6 294 59.2
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 1.5e-89 333.6 271 63.8
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 3.4e-89 332.4 289 60.6
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.3e-88 330.5 224 70.5
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 1.7e-88 330.1 225 72.4
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.7e-88 330.1 226 72.6
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.2e-88 329.7 311 58.8
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 3.8e-88 328.9 223 68.6
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 5.0e-88 328.6 306 55.9
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 6.5e-88 328.2 221 69.2
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 2.5e-87 326.2 279 59.1
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.5e-87 326.2 316 58.5
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 5.5e-87 325.1 236 65.7
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.7e-86 322.8 283 61.8
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.6e-86 322.4 198 76.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 6.1e-86 321.6 265 63.8
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 2.0e-84 316.6 283 61.5
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.3e-83 313.9 212 70.8
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 7.0e-82 308.1 211 68.2
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 2.9e-80 302.8 296 56.1
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.8e-77 293.5 230 64.8
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.7e-72 276.9 232 58.6
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 5.7e-68 261.9 180 70.6
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 4.8e-67 258.8 219 56.6
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.0e-61 241.1 217 56.7
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 6.3e-59 231.9 208 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 8.3e-59 231.5 213 49.8
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 3.5e-57 226.1 157 67.5
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.3e-56 224.2 160 70.6
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 2.8e-54 216.5 200 57.0
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 5.2e-53 212.2 221 43.9
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 2.6e-52 209.9 242 43.4
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 4.9e-51 205.7 210 53.8
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 2.0e-49 200.3 106 91.5
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 1.0e-48 198.0 191 47.1
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 1.7e-48 197.2 164 61.6
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 5.0e-48 195.7 140 67.9
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 5.0e-40 169.1 153 58.8
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 6.6e-40 168.7 131 61.1
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 5.2e-37 159.1 133 56.4
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.0e-32 144.8 80 86.2
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.0e-32 144.8 80 86.2
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.5e-31 141.0 92 72.8
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 5.2e-21 105.9 225 29.3
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 4.4e-20 102.8 126 48.4
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 5.4e-18 95.9 85 55.3
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 6.4e-11 72.4 54 66.7
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.6e-09 67.8 177 26.0
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 6.0e-09 65.9 268 23.5
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.3e-08 63.9 63 57.1
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 3.0e-08 63.5 212 23.6
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 2.5e-07 60.5 48 62.5
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.3e-07 59.7 232 23.3
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 7.4e-07 58.9 237 24.1
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 7.4e-07 58.9 58 48.3
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 7.4e-07 58.9 225 24.0
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 2.1e-06 57.4 77 33.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.1e-06 57.4 225 23.1
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.7e-06 56.6 168 25.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 4.8e-06 56.2 222 22.5
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 6.2e-06 55.8 157 27.4


User provided reference genes

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