Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 7.9e-217 756.9 406 100.0
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 6.5e-211 737.3 407 98.3
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.0e-173 610.9 387 84.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 2.0e-167 592.8 403 80.6
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 2.0e-167 592.8 400 81.2
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.4e-165 586.6 398 80.2
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 5.0e-163 578.2 378 82.5
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.1e-162 577.0 397 79.8
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 7.3e-162 574.3 378 79.9
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.1e-161 572.8 387 79.8
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.7e-161 571.6 400 78.0
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.4e-160 570.1 376 80.9
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.4e-160 570.1 397 77.3
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.0e-160 568.5 381 80.1
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 4.0e-160 568.5 389 79.4
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 5.2e-160 568.2 379 78.6
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 5.2e-160 568.2 385 79.0
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 6.8e-160 567.8 405 76.5
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 8.9e-160 567.4 364 83.5
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.9e-160 567.4 388 79.6
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 9.9e-159 563.9 396 79.3
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 9.9e-159 563.9 335 87.8
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.9e-158 561.6 388 79.4
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 6.4e-158 561.2 335 87.2
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.4e-157 560.1 398 78.1
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.4e-157 560.1 384 79.9
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.4e-157 560.1 400 76.8
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 1.9e-157 559.7 376 80.6
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.9e-157 559.7 386 78.8
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.2e-157 558.9 360 83.3
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 4.1e-157 558.5 379 78.9
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.2e-156 557.0 376 78.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.6e-156 556.6 335 86.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.6e-156 556.6 402 76.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.1e-156 556.2 376 80.1
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.1e-156 556.2 386 78.8
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 6.0e-156 554.7 379 78.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 7.8e-156 554.3 396 75.3
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 7.8e-156 554.3 379 78.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.0e-155 553.9 378 79.9
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.0e-155 553.9 397 76.8
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.0e-155 553.9 387 78.3
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.0e-155 553.9 379 78.6
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.3e-155 553.5 397 76.1
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.7e-155 553.1 327 89.0
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.3e-155 552.7 411 74.7
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.3e-155 552.7 345 83.8
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 5.1e-155 551.6 397 75.8
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.6e-155 551.2 375 78.1
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.1e-154 550.4 404 75.2
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.1e-154 550.4 378 76.5
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.5e-154 550.1 407 74.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.5e-154 550.1 398 75.4
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.9e-154 549.7 383 77.8
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.5e-154 549.3 406 74.4
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.5e-154 549.3 388 75.8
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.5e-154 549.3 382 77.7
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 3.3e-154 548.9 397 76.8
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 4.3e-154 548.5 352 82.4
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 5.6e-154 548.1 382 78.5
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 7.3e-154 547.7 400 75.2
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-153 547.0 407 75.4
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-153 547.0 407 75.4
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.6e-153 546.6 405 72.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.6e-153 546.6 381 77.4
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.1e-153 546.2 385 78.4
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 2.1e-153 546.2 385 77.7
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 4.7e-153 545.0 397 77.1
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 4.7e-153 545.0 375 79.7
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.1e-152 543.9 381 76.9
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.8e-152 543.1 381 77.2
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.8e-152 543.1 383 77.0
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.8e-152 543.1 376 77.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.4e-152 542.7 397 74.8
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 4.0e-152 542.0 385 77.9
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 6.8e-152 541.2 376 77.1
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-151 540.4 398 74.6
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.2e-151 540.4 388 76.3
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-151 540.0 424 73.1
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-151 540.0 424 73.1
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 3.4e-151 538.9 398 74.6
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.4e-151 538.9 412 74.0
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 4.4e-151 538.5 332 84.0
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.8e-151 538.1 352 80.4
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.8e-151 538.1 352 80.4
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 9.9e-151 537.3 397 74.6
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.7e-150 536.6 392 74.7
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 3.8e-150 535.4 399 73.9
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 6.4e-150 534.6 378 75.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 6.4e-150 534.6 378 75.7
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 6.4e-150 534.6 393 76.1
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 8.4e-150 534.3 350 81.4
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 8.4e-150 534.3 334 83.8
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 4.1e-149 531.9 378 76.7
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 7.1e-149 531.2 378 75.1
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 7.1e-149 531.2 389 74.0
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.2e-148 530.4 367 77.7
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.6e-148 530.0 379 74.7
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.7e-148 529.3 332 82.2
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 6.0e-148 528.1 361 78.1
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 7.8e-148 527.7 395 73.9
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.3e-147 526.2 386 73.1
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 6.6e-147 524.6 388 73.7
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 4.3e-146 521.9 329 82.1
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.2e-145 520.4 381 74.0
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 8.1e-145 517.7 377 74.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-144 516.9 377 76.9
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.7e-142 510.0 412 69.9
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 7.1e-141 504.6 297 88.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.3e-139 500.4 330 79.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.9e-139 498.8 375 73.9
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.1e-138 497.3 392 69.6
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 9.6e-138 494.2 297 85.5
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.6e-137 492.3 297 84.8
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 6.2e-137 491.5 297 86.2
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 4.0e-136 488.8 376 72.3
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 6.9e-136 488.0 397 67.3
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.0e-131 474.2 317 78.2
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-130 469.5 353 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 9.6e-130 467.6 333 73.9
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 2.1e-129 466.5 342 74.6
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 9.0e-128 461.1 385 70.1
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.0e-123 447.6 423 61.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.8e-123 446.8 417 65.7
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.8e-123 446.8 317 72.9
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 4.8e-113 412.1 272 81.6
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 3.1e-112 409.5 246 88.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.0e-111 406.8 317 69.1
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.3e-110 404.1 329 69.0
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 5.3e-104 382.1 343 60.6
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.0e-102 377.9 295 66.1
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 3.8e-94 349.4 349 55.0
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.1e-88 329.7 198 87.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 3.6e-76 289.7 198 78.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 3.6e-76 289.7 198 78.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.8e-75 287.3 172 86.0
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.2e-67 259.2 377 46.9
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.5e-63 246.1 292 46.9
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.1e-59 233.4 129 91.5
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 7.8e-55 218.8 332 42.5
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 7.8e-55 218.8 297 43.4
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.5e-53 213.8 154 75.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.7e-49 201.1 199 61.3
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.6e-47 193.0 178 62.4
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.2e-36 156.0 149 58.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.4e-35 154.1 213 47.4
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 2.9e-33 147.1 130 64.6
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 3.3e-29 133.7 80 83.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.9e-27 125.9 86 73.3
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.2e-18 98.6 75 70.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.1e-13 82.0 48 85.4
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 2.5e-13 80.9 85 55.3
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 7.4e-13 79.3 59 69.5
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.4e-11 75.1 64 65.6
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 3.4e-10 70.5 43 83.7
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 4.5e-10 70.1 42 71.4
ATR0037G072 Amborella trichopoda HOM05D004740 ORTHO05D066598 6.0e-07 59.7 92 42.4


User provided reference genes

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