Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.3e-154 549.7 284 100.0
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.1e-153 546.6 284 99.3
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 8.0e-123 444.1 280 79.6
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.0e-118 429.5 280 78.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.3e-114 416.0 277 75.8
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 2.4e-111 406.0 284 73.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 9.1e-111 404.1 259 77.6
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 9.1e-111 404.1 274 74.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.6e-110 403.3 270 74.8
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 7.7e-110 401.0 279 71.7
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 5.0e-109 398.3 289 71.6
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 6.5e-109 397.9 268 75.7
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 8.5e-109 397.5 279 73.5
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.1e-108 397.1 291 71.1
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 4.2e-108 395.2 277 73.3
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 5.5e-108 394.8 290 71.4
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 5.5e-108 394.8 305 67.5
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 5.5e-108 394.8 286 71.3
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 9.4e-108 394.0 277 74.0
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.2e-107 393.7 275 74.2
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.6e-107 393.3 261 75.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.6e-107 392.1 273 72.2
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 4.7e-107 391.7 275 70.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 6.1e-107 391.3 272 72.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 6.1e-107 391.3 284 69.4
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 6.1e-107 391.3 286 71.3
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 6.1e-107 391.3 264 73.9
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.3e-106 389.4 274 71.2
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.3e-106 389.4 284 72.2
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.3e-106 389.4 289 70.9
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.2e-105 387.1 286 71.3
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.5e-105 386.7 276 71.0
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.0e-105 386.3 273 71.4
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.6e-105 386.0 283 70.7
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.4e-105 385.2 270 72.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 5.7e-105 384.8 290 71.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 5.7e-105 384.8 272 72.1
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 7.5e-105 384.4 278 71.9
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 7.5e-105 384.4 254 75.6
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 7.5e-105 384.4 246 77.6
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 9.8e-105 384.0 307 66.1
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.3e-104 383.6 287 70.4
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 2.8e-104 382.5 280 69.6
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 8.3e-104 380.9 283 70.0
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.1e-103 380.6 272 71.7
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.1e-103 380.6 278 70.9
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.4e-103 380.2 283 68.9
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-103 380.2 287 69.0
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.4e-103 379.4 280 69.6
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.1e-103 379.0 282 68.8
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.1e-103 378.6 272 72.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 5.4e-103 378.3 282 69.1
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.2e-102 377.1 264 73.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.2e-102 377.1 282 67.0
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.6e-102 376.7 283 70.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.6e-102 376.7 281 70.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.0e-102 376.3 270 70.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.0e-102 376.3 281 70.1
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 5.9e-102 374.8 277 68.2
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 5.9e-102 374.8 247 74.5
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 7.7e-102 374.4 291 69.8
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.0e-101 374.0 268 72.4
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.3e-101 373.6 284 69.4
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.9e-101 372.5 282 69.1
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.0e-101 371.7 272 71.3
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 5.0e-101 371.7 240 77.9
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.1e-100 370.5 285 69.1
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 3.3e-100 369.0 251 74.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.3e-100 369.0 301 63.8
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.6e-99 365.5 245 75.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.1e-99 364.8 252 71.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 8.9e-98 360.9 241 75.5
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.5e-97 360.1 301 62.8
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.0e-97 359.8 294 66.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 4.4e-97 358.6 275 68.0
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 9.8e-97 357.5 265 69.8
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.3e-96 357.1 288 64.6
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.2e-95 352.4 223 79.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 9.2e-95 350.9 266 69.5
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.2e-94 350.5 296 60.8
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 4.6e-94 348.6 255 72.5
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 4.6e-94 348.6 279 67.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 5.9e-94 348.2 218 78.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 3.0e-93 345.9 282 64.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 6.2e-91 338.2 237 70.9
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.0e-90 335.5 285 64.6
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.2e-89 334.0 289 62.3
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 7.5e-89 331.3 249 67.1
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 9.8e-89 330.9 252 66.3
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 3.7e-88 328.9 267 65.2
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.4e-87 327.0 334 55.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.2e-86 323.9 238 68.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 8.1e-83 311.2 223 71.7
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.6e-81 306.2 217 70.5
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 7.5e-81 304.7 196 75.5
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.7e-80 303.5 280 59.6
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.2e-79 299.3 198 77.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 2.1e-78 296.6 268 57.8
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 3.0e-77 292.7 285 58.2
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 5.6e-76 288.5 194 73.2
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 4.7e-75 285.4 207 71.5
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.8e-74 283.5 172 80.8
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.0e-74 282.3 197 70.6
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 4.0e-74 282.3 233 63.5
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 7.6e-73 278.1 357 48.2
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.6e-70 268.9 169 79.3
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 4.3e-60 235.7 240 48.3
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 2.4e-58 229.9 230 49.6
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 3.1e-58 229.6 239 48.1
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.6e-54 217.2 218 54.6
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-52 209.9 291 46.0
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.6e-49 199.9 199 54.8
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.9e-49 198.0 166 58.4
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.4e-47 193.4 131 74.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 9.6e-44 181.4 263 45.6
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.8e-35 153.3 122 69.7
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.9e-32 143.3 122 65.6
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 5.0e-32 142.5 100 74.0
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.1e-29 132.5 91 69.2
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-28 131.3 122 60.7
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.2e-25 121.3 138 51.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.9e-24 116.7 78 71.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.2e-23 112.8 170 40.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 5.5e-23 112.5 77 76.6
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-22 110.2 89 58.4
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 8.8e-21 105.1 279 31.5
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 6.3e-19 99.0 59 79.7
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-18 97.8 86 60.5
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 7.7e-17 92.0 231 31.2
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 8.5e-16 88.6 83 60.2
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.6e-14 84.3 50 74.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 6.1e-14 82.4 93 50.5
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 3.0e-13 80.1 102 48.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 6.7e-13 79.0 89 51.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 4.4e-12 76.3 200 33.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-11 73.9 58 56.9
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 3.7e-11 73.2 200 31.0
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 7.0e-10 68.9 93 46.2
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 9.1e-10 68.6 55 58.2
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 9.1e-10 68.6 55 58.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 4.5e-09 66.2 206 24.3
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.0e-08 65.1 51 62.7
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.3e-08 64.7 57 52.6
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 8.5e-08 62.0 241 22.0
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-07 61.6 50 60.0
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.5e-07 60.5 261 23.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.5e-07 60.5 224 23.7
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 4.2e-07 59.7 47 66.0
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 8.0e-06 55.5 240 23.8


User provided reference genes

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