Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.2e-46 188.0 117 100.0
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 5.5e-46 187.6 117 99.1
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.6e-29 131.7 112 60.7
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 8.9e-28 127.1 114 59.6
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.6e-27 125.6 111 61.3
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.4e-27 124.8 111 61.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.3e-26 123.2 111 59.5
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.7e-26 122.9 111 60.4
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.9e-26 122.1 111 59.5
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.4e-25 119.0 117 56.4
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.2e-25 118.6 116 57.8
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 114 66.7
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.6e-24 116.3 112 58.0
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 120 57.5
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.5e-24 115.2 112 57.1
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 4.6e-24 114.8 111 55.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 6.0e-24 114.4 116 57.8
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.0e-24 114.4 117 56.4
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.0e-24 114.4 117 56.4
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 7.8e-24 114.0 127 54.3
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.0e-23 113.6 111 56.8
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 111 56.8
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.0e-23 113.6 111 56.8
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.7e-23 112.8 113 54.0
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.7e-23 112.8 116 56.0
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.7e-23 112.8 114 57.0
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 53.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 53.8
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 53.8
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 117 52.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 2.3e-23 112.5 114 55.3
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 3.0e-23 112.1 125 51.2
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 3.0e-23 112.1 115 56.5
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 3.0e-23 112.1 111 55.0
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.0e-23 112.1 114 57.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.0e-23 112.1 111 55.9
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.9e-23 111.7 114 57.0
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.9e-23 111.7 115 52.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.0e-23 111.3 119 52.9
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.6e-23 110.5 111 53.2
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 52.1
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.5e-22 109.8 118 59.3
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.9e-22 109.4 114 51.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.9e-22 109.4 111 52.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.5e-22 109.0 119 51.3
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.5e-22 109.0 117 55.6
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.5e-22 109.0 113 54.0
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 3.3e-22 108.6 116 61.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 5.6e-22 107.8 116 59.5
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 5.6e-22 107.8 112 54.5
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 7.3e-22 107.5 116 49.1
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 7.3e-22 107.5 121 52.1
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 9.5e-22 107.1 117 53.8
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 9.5e-22 107.1 111 55.0
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.2e-21 106.7 113 52.2
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.2e-21 106.7 119 50.4
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.6e-21 106.3 118 50.0
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.1e-21 105.9 117 52.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 2.1e-21 105.9 112 61.6
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.8e-21 105.5 118 51.7
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.6e-21 105.1 116 56.9
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.6e-21 105.1 119 51.3
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 3.6e-21 105.1 116 51.7
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.7e-21 104.8 118 55.9
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 4.7e-21 104.8 117 53.0
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 6.2e-21 104.4 117 52.1
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 6.2e-21 104.4 112 51.8
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 8.0e-21 104.0 117 53.8
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 8.0e-21 104.0 112 53.6
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 8.0e-21 104.0 116 53.4
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 8.0e-21 104.0 119 59.7
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 8.0e-21 104.0 116 51.7
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 8.0e-21 104.0 116 50.0
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.4e-20 103.2 113 51.3
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.4e-20 103.2 117 57.3
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.4e-20 103.2 103 57.3
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.4e-20 103.2 110 54.5
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.8e-20 102.8 119 57.1
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.8e-20 102.8 112 54.5
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.8e-20 102.8 114 52.6
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.8e-20 102.8 124 50.0
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 3.1e-20 102.1 116 52.6
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.8
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 116 51.7
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.8
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.8
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.0e-20 101.7 114 51.8
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 5.2e-20 101.3 119 48.7
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 5.2e-20 101.3 119 48.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 56.0
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 56.0
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 56.0
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 6.8e-20 100.9 115 52.2
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 8.9e-20 100.5 118 52.5
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 8.9e-20 100.5 119 50.4
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.2e-19 100.1 117 52.1
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 59.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-19 99.8 119 50.4
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 2.6e-19 99.0 119 51.3
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.6e-19 99.0 116 53.4
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 3.4e-19 98.6 115 53.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 3.4e-19 98.6 115 53.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.4e-19 98.6 112 50.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 3.4e-19 98.6 112 55.4
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.3e-18 96.7 118 58.5
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.7e-18 96.3 127 46.5
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.2e-18 95.9 116 51.7
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 4.9e-18 94.7 119 61.3
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 6.4e-18 94.4 120 50.8
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 8.3e-18 94.0 115 58.3
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.2e-17 92.0 104 52.9
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 3.2e-17 92.0 121 46.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 6.0e-16 87.8 104 57.7
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 6.0e-16 87.8 154 40.3
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.3e-14 82.0 115 54.8
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.3e-14 82.0 117 47.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 4.3e-14 81.6 114 45.6
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 4.3e-14 81.6 111 42.3
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 2.1e-13 79.3 110 45.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.6e-13 78.6 65 69.2
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.6e-13 78.6 115 45.2
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 3.6e-13 78.6 116 45.7
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 6.2e-13 77.8 115 45.2
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 8.1e-13 77.4 82 52.4
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 5.2e-12 74.7 47 80.9
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 8.9e-12 73.9 110 42.7
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 8.9e-12 73.9 116 42.2
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.2e-11 73.6 82 51.2
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.2e-10 69.3 84 44.0
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.4e-09 66.6 79 44.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.9e-09 66.2 78 48.7
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.9e-09 66.2 114 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 6.0e-08 61.2 128 39.1
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.0e-07 60.5 87 41.4
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-07 59.3 82 42.7
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.5e-06 55.8 99 50.5
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 5.6e-06 54.7 34 76.5
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 5.6e-06 54.7 48 62.5
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 7.3e-06 54.3 39 76.9
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 7.3e-06 54.3 46 67.4
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.3e-06 54.3 33 69.7
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.3e-06 54.3 33 69.7


User provided reference genes

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