Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.1e-285 984.6 543 100.0
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 2.7e-268 928.3 541 94.6
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.0e-163 579.3 454 67.0
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.7e-159 566.2 443 67.3
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 3.0e-155 552.7 443 64.1
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.4e-154 549.3 444 63.5
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 5.7e-154 548.5 447 64.0
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.1e-152 544.3 454 62.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.2e-151 540.8 444 64.4
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 7.7e-151 538.1 448 63.4
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.1e-148 530.0 455 62.0
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.7e-148 528.9 459 60.6
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 4.7e-148 528.9 452 61.9
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 6.8e-147 525.0 452 62.6
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 3.4e-146 522.7 455 61.8
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 9.8e-146 521.2 433 63.3
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 8.3e-145 518.1 459 61.4
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 8.3e-145 518.1 447 61.3
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.8e-144 516.9 459 61.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.4e-144 516.5 459 61.2
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 4.1e-144 515.8 430 63.0
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 7.8e-143 511.5 457 59.3
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.0e-142 511.1 444 60.1
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.3e-142 510.8 451 58.3
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.7e-142 510.4 444 61.9
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.7e-142 510.4 447 60.9
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.3e-142 510.0 436 61.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.9e-142 509.2 448 59.4
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 5.0e-142 508.8 447 60.6
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 6.6e-142 508.4 423 64.1
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.1e-141 507.7 450 59.3
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.5e-141 507.3 456 59.0
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 2.5e-141 506.5 442 60.0
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 2.5e-141 506.5 445 60.9
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.5e-141 506.5 446 59.4
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 5.6e-141 505.4 451 59.6
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 7.3e-141 505.0 453 59.2
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 7.3e-141 505.0 437 59.5
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.5e-141 504.6 450 60.4
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.2e-140 504.2 457 59.5
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 2.8e-140 503.1 416 61.1
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 2.8e-140 503.1 427 61.4
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 4.7e-140 502.3 451 59.4
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 3.1e-139 499.6 414 63.0
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.1e-139 499.6 439 59.9
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 8.9e-139 498.0 423 61.9
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.2e-138 497.7 465 57.4
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 6.4e-137 491.9 443 58.0
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 8.3e-137 491.5 452 58.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-136 491.1 410 61.0
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 2.4e-136 490.0 447 57.0
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 7.0e-136 488.4 413 62.0
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.6e-135 487.3 446 57.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.3e-134 483.4 417 59.7
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.0e-134 483.0 435 59.1
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.0e-134 483.0 442 57.5
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 3.9e-134 482.6 549 49.4
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 8.6e-134 481.5 453 58.3
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 8.6e-134 481.5 445 56.9
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.5e-133 479.9 443 57.8
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.5e-133 479.9 456 56.8
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 4.3e-133 479.2 452 55.8
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 4.3e-133 479.2 416 59.1
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 5.6e-133 478.8 443 59.1
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 7.3e-133 478.4 442 57.0
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.7e-132 475.7 431 59.2
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-131 474.6 450 57.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.1e-131 474.6 450 56.0
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.4e-131 474.2 461 56.2
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.8e-131 473.8 449 55.5
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 6.8e-131 471.9 447 56.2
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.2e-130 471.1 443 56.9
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.5e-130 470.7 434 56.2
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.6e-130 469.9 446 56.3
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 3.2e-128 463.0 444 53.8
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 4.1e-128 462.6 438 57.3
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 7.1e-128 461.8 444 55.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 1.6e-127 460.7 436 56.9
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 7.8e-127 458.4 456 54.4
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 3.0e-126 456.4 442 54.5
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.0e-126 456.4 456 53.1
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 3.0e-126 456.4 438 54.3
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 6.6e-126 455.3 451 54.3
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 8.6e-126 454.9 441 54.6
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-125 454.5 448 53.8
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-125 454.1 456 53.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.9e-125 453.8 440 54.3
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 2.5e-125 453.4 372 63.2
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.5e-125 453.4 444 54.5
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.5e-125 453.4 444 54.5
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 5.6e-125 452.2 441 53.7
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.2e-124 451.1 446 52.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 3.6e-124 449.5 451 53.9
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 4.7e-124 449.1 443 54.6
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 6.2e-124 448.7 437 54.0
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 8.1e-124 448.4 449 53.9
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.4e-123 447.6 447 54.6
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 6.8e-123 445.3 448 53.6
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 7.6e-122 441.8 452 53.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.3e-121 441.0 451 54.5
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 6.4e-121 438.7 452 52.0
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.4e-120 437.6 465 50.5
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.9e-120 437.2 452 52.0
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.4e-120 436.8 455 53.4
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 7.1e-120 435.3 441 54.6
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 6.0e-119 432.2 367 62.4
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.3e-118 431.0 417 55.6
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.8e-115 420.6 433 53.6
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.8e-115 420.6 441 52.8
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.4e-114 416.0 441 52.4
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 2.2e-113 413.7 463 50.3
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.1e-112 408.7 321 61.7
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 9.3e-112 408.3 347 62.5
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.5e-111 406.4 447 51.0
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.9e-109 400.6 432 51.4
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 2.0e-106 390.6 420 52.9
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 3.4e-106 389.8 378 56.3
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 2.6e-98 363.6 442 47.7
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 2.1e-95 354.0 425 46.1
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-90 337.8 451 45.0
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.7e-89 334.3 316 54.7
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 6.5e-89 332.4 340 54.4
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 5.5e-88 329.3 335 54.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 3.9e-86 323.2 301 54.2
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 5.1e-86 322.8 424 44.1
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.1e-84 317.4 461 41.6
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.7e-84 316.6 436 45.2
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 6.5e-81 305.8 311 55.0
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 9.7e-77 292.0 196 72.4
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 1.2e-71 275.0 251 55.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 8.8e-70 268.9 315 45.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.7e-68 264.6 197 69.0
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 5.3e-67 259.6 295 47.8
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 7.2e-64 249.2 498 32.7
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.0e-61 241.1 260 51.9
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 7.7e-58 229.2 239 57.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-50 205.3 189 56.1
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.7e-41 174.9 412 30.6
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 6.8e-38 162.9 132 59.8
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-34 151.8 122 62.3
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 3.8e-33 147.1 336 30.7
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-25 121.7 84 66.7
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.4e-22 112.1 70 71.4
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.2e-21 109.0 129 51.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.0e-21 108.2 195 34.9
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.5e-21 106.3 94 56.4
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.5e-18 97.4 81 53.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-17 95.5 67 65.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.5e-16 91.3 64 65.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.2e-15 89.0 64 64.1
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.2e-12 78.2 57 68.4
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 9.2e-11 72.8 43 74.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.3e-06 58.2 66 47.0


User provided reference genes

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