Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 3.5e-161 571.6 304 100.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.6e-156 555.4 304 97.7
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.2e-131 472.6 294 84.7
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.2e-131 472.6 294 84.7
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.6e-129 466.5 290 84.5
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.0e-127 459.5 290 83.8
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.0e-127 459.5 290 83.8
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 4.4e-127 458.4 292 83.2
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.7e-123 446.4 294 79.3
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 1.5e-122 443.4 303 76.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 1.5e-122 443.4 303 76.6
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 9.4e-122 440.7 294 78.6
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 76.0
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.1e-121 439.5 296 77.7
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.6e-121 438.7 304 76.0
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 3.6e-121 438.7 294 76.9
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.0e-120 437.2 303 77.9
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.4e-120 436.8 304 76.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.4e-120 436.8 292 78.4
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.8e-120 436.4 304 77.6
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.8e-120 436.4 304 75.7
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.3e-120 436.0 304 75.3
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.6e-119 432.6 294 77.6
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 2.6e-119 432.6 294 77.2
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.6e-119 432.6 294 76.5
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 7.5e-119 431.0 292 78.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 9.7e-119 430.6 294 77.2
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.7e-118 429.9 294 77.2
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.2e-118 429.5 302 75.2
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 8.3e-118 427.6 304 73.7
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 74.0
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.1e-117 427.2 294 76.9
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-117 426.8 294 76.5
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.8e-117 426.4 304 74.3
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.1e-117 425.6 304 73.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.1e-117 425.2 293 77.5
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.1e-117 425.2 290 75.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 4.1e-117 425.2 294 75.5
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 4.1e-117 425.2 294 75.9
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.3e-117 424.9 290 75.9
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 5.3e-117 424.9 292 76.0
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 7.0e-117 424.5 294 75.9
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.2e-116 423.7 290 76.9
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.2e-116 423.7 304 75.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.0e-116 422.9 293 77.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 2.7e-116 422.5 294 75.5
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.5e-116 421.8 290 75.5
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 7.7e-116 421.0 293 76.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 1.0e-115 420.6 294 76.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.0e-115 420.6 294 73.5
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 2.2e-115 419.5 304 72.4
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 2.2e-115 419.5 291 77.7
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 6.5e-115 417.9 292 76.0
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 6.5e-115 417.9 304 72.7
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 8.5e-115 417.5 293 76.5
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.9e-114 416.4 304 72.7
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.5e-114 416.0 294 73.5
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 3.2e-114 415.6 299 75.3
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 5.5e-114 414.8 293 76.5
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 7.2e-114 414.5 294 73.5
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.2e-114 414.5 294 73.1
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 7.2e-114 414.5 304 72.4
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.2e-113 413.7 294 72.8
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.2e-113 413.7 294 72.8
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.2e-113 413.7 294 72.8
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.0e-112 410.6 294 74.5
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.4e-112 410.2 293 74.4
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.8e-112 409.8 294 73.5
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 3.0e-112 409.1 293 75.4
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.0e-112 408.7 291 75.9
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 4.0e-112 408.7 304 72.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 5.2e-112 408.3 292 75.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 5.2e-112 408.3 289 76.5
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.8e-112 407.9 294 72.1
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 3.4e-111 405.6 293 73.7
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 3.4e-111 405.6 293 73.7
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 4.4e-111 405.2 292 73.6
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 7.5e-111 404.4 294 73.1
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.3e-110 403.7 281 75.8
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.2e-110 402.9 290 73.1
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.8e-110 402.5 304 71.4
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 4.8e-110 401.7 291 74.9
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-109 400.6 306 72.2
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.4e-109 400.2 294 72.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.4e-109 399.4 304 71.1
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 5.4e-109 398.3 293 72.4
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 5.4e-109 398.3 281 75.8
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 3.5e-108 395.6 293 73.7
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.8e-107 392.1 293 72.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 6.6e-107 391.3 290 72.1
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.9e-106 389.8 292 71.9
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 4.2e-106 388.7 294 71.8
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.6e-105 386.7 290 70.7
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.4e-104 383.6 299 68.9
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.8e-104 383.3 281 75.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.0e-104 382.1 299 66.2
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 6.8e-104 381.3 294 67.3
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.0e-103 379.8 288 71.5
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 3.2e-101 372.5 305 66.9
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 5.9e-100 368.2 290 68.6
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.8e-100 367.9 281 73.0
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.9e-99 365.5 294 67.3
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.6e-97 360.1 281 68.7
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 6.8e-96 354.8 292 65.1
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 7.5e-95 351.3 273 71.1
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 4.3e-82 308.9 272 64.0
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.5e-79 300.4 306 55.2
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-76 290.8 219 70.8
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.3e-75 287.3 194 78.9
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 3.6e-73 279.3 295 56.6
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.4e-70 268.1 194 75.3
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.9e-67 259.2 295 50.8
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 5.3e-64 248.8 195 69.2
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.4e-61 240.7 159 79.9
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.2e-60 237.7 291 47.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.6e-60 237.3 163 73.0
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.7e-59 233.8 191 62.8
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.6e-52 210.7 338 42.3
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.0e-52 208.8 291 47.4
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.1e-51 205.7 139 77.7
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.7e-46 190.7 133 72.9
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.9e-42 177.2 234 50.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.6e-36 157.5 186 51.1
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.6e-36 157.5 116 74.1
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 4.6e-36 156.0 201 46.8
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.5e-34 151.0 99 77.8
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.4e-32 143.7 182 44.0
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.1e-32 142.9 169 52.1
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.5e-29 133.7 97 76.3
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.9e-28 128.6 89 69.7
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.7e-20 102.8 86 64.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 2.2e-17 94.0 282 29.4
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 2.2e-17 94.0 85 69.4
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 5.3e-16 89.4 60 73.3
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 9.1e-16 88.6 302 28.1
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.6e-15 87.8 172 37.8
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 3.2e-13 80.1 42 81.0
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 5.5e-13 79.3 49 75.5
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.0e-11 73.2 150 37.3
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 9.1e-08 62.0 56 55.4


User provided reference genes

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