Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 2.9e-135 485.3 262 100.0
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 4.5e-104 381.7 286 79.0
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 7.6e-104 380.9 283 79.9
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 7.2e-62 241.5 270 58.1
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 7.2e-62 241.5 252 60.7
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 2.1e-61 240.0 272 55.5
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.2e-59 234.2 257 54.5
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 7.5e-59 231.5 280 54.3
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 3.7e-58 229.2 260 57.7
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 8.3e-58 228.0 267 57.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.8e-57 226.9 278 54.7
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 3.1e-57 226.1 261 55.6
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 3.1e-57 226.1 255 56.5
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 7.0e-57 224.9 259 56.4
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 7.0e-57 224.9 265 53.6
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.2e-56 224.2 266 53.0
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 2.7e-56 223.0 252 57.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 4.5e-56 222.2 258 57.0
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 4.5e-56 222.2 265 54.3
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.8e-55 219.2 277 53.8
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 3.8e-55 219.2 285 53.0
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 8.6e-55 218.0 252 59.1
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 8.6e-55 218.0 262 54.6
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 8.6e-55 218.0 240 59.2
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 8.6e-55 218.0 259 54.8
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 2.5e-54 216.5 243 56.0
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.5e-54 214.5 268 50.0
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.2e-53 214.2 254 56.3
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.6e-53 213.8 263 55.5
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 1.6e-53 213.8 267 53.9
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 4.7e-53 212.2 261 51.3
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 8.0e-53 211.5 261 54.8
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 3.0e-52 209.5 249 50.6
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 8.9e-52 208.0 255 52.5
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 1.2e-51 207.6 270 52.2
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 2.6e-51 206.5 268 50.4
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 3.4e-51 206.1 265 55.1
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 4.4e-51 205.7 262 50.8
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 7.5e-51 204.9 251 54.2
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 7.5e-51 204.9 260 49.2
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.3e-50 204.1 263 50.2
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.7e-50 203.8 263 54.8
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.7e-50 203.8 253 53.4
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 2.8e-50 203.0 246 52.8
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 2.8e-50 203.0 275 50.5
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 2.8e-50 203.0 287 48.4
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 3.7e-50 202.6 252 52.4
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 6.3e-50 201.8 262 48.5
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 1.1e-49 201.1 285 48.8
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.4e-49 200.7 260 53.5
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.8e-49 200.3 263 54.4
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 1.8e-49 200.3 261 52.5
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 3.2e-49 199.5 269 50.2
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 7.0e-49 198.4 263 53.6
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 9.2e-49 198.0 270 50.0
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 9.2e-49 198.0 276 50.0
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.2e-48 197.6 262 50.4
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.2e-48 197.6 260 50.0
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 3.5e-48 196.1 271 47.2
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 5.9e-48 195.3 270 50.7
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 7.8e-48 194.9 275 47.3
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 7.8e-48 194.9 264 52.3
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.7e-47 193.7 281 47.0
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.9e-47 193.0 253 49.8
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 2.9e-47 193.0 251 50.6
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.3e-46 189.1 262 52.3
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 5.6e-46 188.7 222 54.1
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.2e-45 187.6 264 51.9
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 3.6e-45 186.0 227 49.8
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 4.7e-45 185.7 222 54.5
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 6.1e-45 185.3 253 48.6
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-44 184.1 233 53.2
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.4e-44 184.1 232 53.4
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 2.3e-44 183.3 226 54.4
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 3.1e-44 183.0 238 52.5
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 4.0e-44 182.6 226 54.4
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 4.0e-44 182.6 273 47.3
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.0e-44 182.6 253 46.2
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 4.0e-44 182.6 263 50.6
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 2.6e-43 179.9 291 43.0
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.4e-43 179.1 271 46.1
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 4.4e-43 179.1 225 52.4
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 5.8e-43 178.7 271 47.6
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.7e-42 177.2 221 50.7
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-42 177.2 269 48.0
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.7e-42 177.2 305 43.9
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 2.2e-42 176.8 231 51.9
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.7e-42 176.0 229 50.2
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 8.3e-42 174.9 264 46.2
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.4e-41 174.1 265 48.3
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.2e-41 172.9 272 48.2
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.2e-41 172.9 222 49.5
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 4.1e-41 172.6 231 50.6
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 4.1e-41 172.6 231 49.4
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 7.0e-41 171.8 271 46.9
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 7.0e-41 171.8 216 53.2
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 1.2e-40 171.0 282 43.3
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.6e-40 170.6 271 46.9
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 2.0e-40 170.2 266 45.1
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 2.3e-39 166.8 211 48.3
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 3.0e-39 166.4 250 44.0
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 5.0e-39 165.6 262 46.2
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 5.0e-39 165.6 265 46.8
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.5e-38 164.1 231 50.2
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 5.6e-38 162.2 247 45.7
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.4e-36 157.5 247 44.5
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.4e-36 157.5 249 48.2
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 5.2e-36 155.6 271 40.6
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.5e-35 154.1 267 41.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.0e-35 153.7 261 41.8
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 7.5e-35 151.8 254 41.7
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.3e-34 151.0 253 43.9
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.7e-34 150.6 246 42.7
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.7e-34 149.4 105 67.6
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 3.7e-34 149.4 207 45.4
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 6.4e-34 148.7 145 58.6
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 8.3e-34 148.3 251 42.2
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.4e-33 147.5 245 42.9
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-33 146.7 244 41.4
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 2.4e-33 146.7 261 42.5
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.4e-33 146.7 246 48.4
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.2e-33 146.4 248 42.3
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 4.1e-33 146.0 123 61.0
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.9e-31 139.4 110 61.8
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-30 137.9 249 41.8
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 7.3e-30 135.2 248 44.0
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.1e-28 131.3 257 38.1
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 4.0e-28 129.4 247 42.5
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 7.6e-27 125.2 105 59.0
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 4.1e-25 119.4 267 37.8
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.2e-24 117.9 279 33.0
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 6.0e-24 115.5 115 50.4
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.0e-23 114.8 135 46.7
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 2.3e-23 113.6 258 35.3
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 3.0e-23 113.2 227 35.7
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 7.3e-22 108.6 130 43.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 7.3e-22 108.6 130 43.8
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.6e-21 106.3 231 35.5
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.8e-20 104.0 99 53.5
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 1.8e-20 104.0 85 57.6
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 5.2e-20 102.4 104 51.0
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 4.4e-19 99.4 80 57.5
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-18 95.9 223 34.5
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 4.9e-18 95.9 108 45.4
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 4.9e-18 95.9 293 30.4
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 8.4e-18 95.1 78 64.1
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.4e-17 94.4 116 43.1
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.4e-17 94.4 251 32.7
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-17 94.0 120 45.0
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 2.8e-13 80.1 178 36.0
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.4e-12 77.8 79 54.4
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.4e-09 67.0 122 39.3
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 3.9e-07 59.7 334 26.3
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 8.7e-07 58.5 40 60.0
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.9e-06 57.4 86 41.9
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 7.3e-06 55.5 81 50.6


User provided reference genes

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