Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 6.4e-304 1046.6 517 100.0
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-298 1028.9 517 98.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 9.1e-234 813.5 515 77.1
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.3e-227 793.1 517 76.2
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.0e-224 781.2 488 78.7
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 2.5e-223 778.9 514 73.9
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.6e-222 775.0 531 71.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.7e-219 765.0 515 72.2
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 7.0e-218 760.8 514 72.8
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.7e-216 756.1 514 73.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.5e-215 753.1 514 73.0
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.9e-215 752.7 514 72.0
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 3.2e-215 751.9 512 72.5
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 5.5e-215 751.1 514 72.6
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.2e-214 750.0 514 72.2
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 3.6e-214 748.4 513 73.3
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 6.1e-214 747.7 514 72.0
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.0e-213 746.9 514 72.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 5.2e-213 744.6 548 66.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.5e-212 743.0 518 71.8
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 3.4e-212 741.9 519 71.5
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 5.7e-212 741.1 510 72.0
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.7e-212 741.1 514 70.8
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.7e-211 739.6 518 71.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.1e-210 736.9 514 71.6
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.4e-210 736.5 514 71.4
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 7.0e-210 734.2 513 71.0
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.0e-210 734.2 514 70.8
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-209 732.3 514 70.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.5e-209 731.5 512 71.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 4.5e-209 731.5 513 71.9
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.9e-209 731.1 514 71.0
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.3e-208 729.9 512 70.5
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.7e-208 729.6 513 70.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.9e-208 728.8 513 70.6
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.0e-208 728.0 514 70.2
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 8.6e-208 727.2 514 70.2
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.2e-206 723.4 514 70.2
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.1e-206 722.6 513 71.2
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.8e-206 722.2 514 69.5
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-205 720.3 513 70.0
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 6.8e-205 717.6 514 68.7
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 8.9e-205 717.2 514 68.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.2e-204 716.8 514 68.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 4.4e-204 714.9 552 65.8
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 5.7e-204 714.5 513 69.4
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 7.5e-204 714.1 474 74.7
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 7.5e-204 714.1 513 69.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.2e-203 712.6 514 67.7
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.9e-203 712.2 454 76.9
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-202 710.3 512 68.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.4e-202 709.9 552 65.4
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.1e-202 708.4 504 69.0
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 9.2e-202 707.2 522 69.7
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.0e-201 706.1 512 69.5
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 5.9e-201 704.5 601 60.1
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.0e-200 703.7 513 68.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.1e-199 700.3 514 67.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.5e-199 699.9 513 68.4
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 4.3e-199 698.4 515 68.3
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.6e-198 696.4 514 69.5
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.8e-198 695.7 504 69.4
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 4.7e-198 694.9 513 68.0
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.0e-197 693.7 513 68.4
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.0e-197 693.7 513 67.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-197 693.3 514 68.3
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.4e-197 693.3 512 66.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-197 693.0 513 67.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-197 693.0 517 67.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-197 692.2 513 67.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 3.1e-197 692.2 516 67.1
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 4.0e-197 691.8 514 67.7
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 4.0e-197 691.8 475 71.8
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 5.2e-197 691.4 522 68.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.0e-196 689.5 513 68.0
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.0e-196 689.5 514 68.1
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.0e-196 689.5 514 68.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 2.0e-196 689.5 513 67.1
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.4e-196 688.7 513 67.6
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.4e-196 688.7 513 68.0
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.4e-196 688.7 513 67.6
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.4e-196 688.7 479 71.6
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 5.8e-196 688.0 513 68.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 5.8e-196 688.0 506 69.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 7.5e-196 687.6 514 67.3
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 9.8e-196 687.2 482 70.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.9e-195 685.6 512 67.6
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.4e-195 684.5 505 67.3
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-194 683.7 512 67.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.4e-194 683.3 514 67.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-194 683.3 505 67.5
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.9e-194 682.9 513 67.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 3.2e-194 682.2 516 67.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 3.2e-194 682.2 518 66.6
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 4.1e-194 681.8 513 67.1
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 5.4e-194 681.4 521 66.2
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.2e-193 680.2 514 67.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.7e-193 679.1 466 73.2
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.7e-192 676.4 504 66.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 3.9e-192 675.2 503 68.2
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.0e-192 674.9 512 66.4
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.3e-191 672.2 566 61.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 5.6e-191 671.4 588 59.5
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.5e-188 663.3 514 64.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.0e-188 662.9 501 66.5
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.4e-187 657.9 517 65.6
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.1e-186 657.1 502 65.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 9.2e-186 654.1 453 72.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-184 649.4 513 65.7
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.1e-184 648.3 514 65.4
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.1e-184 648.3 514 65.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.9e-183 646.4 513 65.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 8.1e-182 641.0 513 64.3
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.1e-181 639.0 539 62.9
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.6e-180 636.0 512 62.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 5.8e-180 634.8 515 63.9
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 2.9e-179 632.5 505 63.6
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.6e-177 626.7 472 67.2
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.6e-177 626.7 527 61.9
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.5e-175 620.2 532 61.1
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-174 615.9 465 66.9
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.6e-169 600.1 513 61.0
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.6e-158 563.5 404 68.8
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.2e-156 557.4 403 68.7
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 6.0e-153 545.0 527 53.7
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 4.3e-151 538.9 557 52.6
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 4.0e-149 532.3 664 47.9
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.8e-147 525.8 493 57.6
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 5.5e-146 521.9 421 63.2
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.8e-136 490.3 463 57.0
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 8.2e-126 454.9 340 68.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.6e-124 449.9 279 77.1
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.9e-123 446.4 515 49.1
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 9.7e-111 404.8 273 71.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.8e-110 403.3 275 72.7
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 7.8e-92 342.0 240 67.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 3.8e-91 339.7 246 69.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.9e-85 320.9 247 65.6
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.1e-76 290.8 212 67.9
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.4e-69 268.1 219 64.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.2e-62 244.2 522 33.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.1e-60 237.7 505 35.4
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.5e-58 230.7 397 35.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 6.6e-51 206.1 139 72.7
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.1e-43 179.9 189 49.7
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.5e-42 177.6 121 71.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 3.2e-37 160.6 110 72.7
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.3e-37 159.1 187 42.8
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.5e-28 130.6 249 37.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.0e-27 129.0 249 37.3
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.3e-27 128.6 68 83.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.0e-27 127.5 113 57.5
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.1e-24 117.5 101 65.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.0e-19 102.4 181 30.9
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-18 98.6 86 62.8
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.8e-16 91.7 114 46.5
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.9e-13 81.6 61 63.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 4.4e-10 70.5 85 47.1
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.1e-08 65.9 211 27.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.6e-07 61.2 36 75.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.5e-07 60.8 35 77.1
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 3.8e-06 57.4 136 29.4


User provided reference genes

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