Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 0.0e+00 1419.4 719 100.0
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 0.0e+00 1396.7 719 98.3
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 0.0e+00 1130.5 720 79.0
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 0.0e+00 1115.5 718 78.4
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1098.6 721 76.7
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1076.2 720 74.7
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 3.1e-309 1064.7 721 74.3
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 4.3e-306 1054.3 721 73.2
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 3.6e-305 1051.2 721 72.8
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 1.4e-304 1049.3 721 72.7
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 6.8e-304 1047.0 721 72.7
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 6.8e-304 1047.0 720 72.4
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 5.8e-303 1043.9 707 74.3
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 1.1e-301 1039.6 722 71.7
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.4e-301 1039.3 717 71.4
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 2.4e-301 1038.5 721 72.4
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 4.1e-301 1037.7 723 70.8
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 1.6e-300 1035.8 724 72.4
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.6e-300 1035.8 720 72.5
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 6.0e-300 1033.9 725 71.4
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 3.0e-299 1031.6 721 71.7
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 3.9e-299 1031.2 723 71.1
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 2.1e-297 1025.4 720 72.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 6.2e-297 1023.8 721 71.7
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 1.8e-296 1022.3 722 70.1
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 9.8e-295 1016.5 789 66.4
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 8.3e-294 1013.4 722 71.5
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 7.0e-293 1010.4 722 70.8
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 3.5e-292 1008.1 725 70.1
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 5.1e-291 1004.2 717 69.9
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 2.1e-289 998.8 723 69.6
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 8.1e-289 996.9 723 69.4
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.8e-288 995.7 723 69.3
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 4.0e-288 994.6 723 69.3
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 3.4e-287 991.5 721 69.3
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 3.7e-286 988.0 720 67.6
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 4.9e-286 987.6 714 69.5
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 3.2e-285 984.9 722 68.8
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 4.1e-285 984.6 722 67.3
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 4.6e-284 981.1 721 69.5
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.3e-283 979.5 726 69.8
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 1.7e-283 979.2 724 68.2
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 8.6e-283 976.9 833 61.9
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 9.5e-282 973.4 721 66.4
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 1.2e-281 973.0 727 68.1
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 5.2e-280 967.6 725 67.2
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 3.4e-279 964.9 734 67.4
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 5.8e-279 964.1 720 67.1
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 3.8e-278 961.4 721 67.8
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 4.2e-277 958.0 722 67.2
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 7.1e-277 957.2 720 67.4
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.3e-275 952.2 723 67.4
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 3.3e-274 948.3 695 68.8
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.6e-273 946.0 727 68.1
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.4e-272 943.0 731 66.1
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 9.0e-272 940.3 722 66.8
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 4.9e-270 934.5 719 66.8
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 5.4e-269 931.0 725 66.9
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 9.3e-269 930.2 717 66.4
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 9.6e-266 920.2 621 74.2
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 8.1e-265 917.1 729 65.6
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 3.5e-260 901.7 719 65.6
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 8.7e-259 897.1 732 63.1
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 1.4e-256 889.8 655 69.9
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 9.0e-256 887.1 722 60.8
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.6e-252 876.3 710 63.4
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.3e-249 866.7 720 60.8
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 4.8e-249 864.8 720 60.1
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 2.4e-248 862.4 721 60.5
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 9.0e-248 860.5 720 60.3
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 1.1e-245 853.6 713 59.5
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.4e-245 853.2 721 61.2
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 3.2e-245 852.0 721 61.0
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 5.5e-245 851.3 720 59.0
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 4.6e-244 848.2 721 58.8
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 1.0e-243 847.0 721 58.7
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 1.8e-243 846.3 723 59.5
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 2.5e-242 842.4 720 58.5
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 2.5e-242 842.4 720 58.5
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 2.5e-242 842.4 720 58.5
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 1.4e-216 756.9 660 58.5
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 2.6e-210 736.1 586 65.0
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.3e-206 723.8 729 55.3
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.4e-195 687.2 479 70.6
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 6.8e-195 684.9 669 55.6
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 6.6e-190 668.3 681 52.9
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 1.8e-187 660.2 663 52.9
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 2.8e-180 636.3 675 50.7
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 6.2e-180 635.2 471 70.1
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.7e-177 627.1 670 50.7
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 3.6e-172 609.4 434 73.7
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.2e-172 608.6 602 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 3.2e-152 543.1 664 46.4
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.1e-148 530.4 508 56.7
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 2.9e-145 520.0 426 63.4
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.8e-145 519.6 429 58.7
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 9.3e-128 461.8 659 39.2
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.6e-127 461.1 376 63.0
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.0e-126 458.4 391 57.8
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 6.5e-121 439.1 334 66.8
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 4.8e-116 422.9 480 50.8
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.2e-113 414.1 306 65.0
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 9.4e-112 408.7 347 63.4
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 1.8e-110 404.4 393 54.2
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 5.9e-106 389.4 228 86.8
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 2.7e-103 380.6 311 64.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 9.7e-101 372.1 581 39.9
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 5.9e-98 362.8 295 62.7
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 8.5e-97 359.0 270 67.8
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 8.6e-73 279.3 237 59.5
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.5e-64 251.9 204 61.3
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 6.4e-52 209.9 153 70.6
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 7.1e-51 206.5 158 67.7
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 9.9e-45 186.0 137 64.2
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 4.6e-34 150.6 147 49.0
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 7.9e-34 149.8 726 25.1
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 1.9e-24 118.6 106 58.5
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.2e-21 109.4 71 74.6
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 8.4e-20 103.2 69 69.6
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 1.1e-14 86.3 677 23.8
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 2.0e-13 82.0 70 61.4
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.9e-08 65.5 43 72.1
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 9.1e-06 56.6 52 46.2


User provided reference genes

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