Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 0.0e+00 1438.3 772 100.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.3e-204 717.2 407 97.1
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 4.6e-173 612.5 799 50.4
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.7e-114 417.9 862 39.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 8.3e-106 389.0 506 51.2
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.5e-88 330.5 861 36.0
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.2e-83 315.5 809 37.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.9e-81 308.1 836 34.2
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.1e-69 268.1 808 32.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.3e-63 248.8 837 32.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.6e-63 246.5 846 32.4
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.4e-60 238.8 814 30.8
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.4e-60 238.0 813 31.6
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 5.2e-60 236.9 849 30.4
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 8.9e-60 236.1 800 32.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.6e-59 234.6 817 29.5
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.9e-58 231.1 414 44.2
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 7.8e-56 223.0 802 29.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.9e-55 220.7 763 31.5
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.1e-54 219.2 399 43.6
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 7.3e-54 216.5 680 31.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.6e-53 215.3 404 42.3
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 2.1e-53 214.9 812 30.0
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 3.6e-53 214.2 755 31.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 4.8e-53 213.8 808 30.0
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 6.2e-53 213.4 840 29.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.3e-52 210.3 834 30.1
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.0e-51 208.4 826 30.9
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 5.8e-51 206.8 746 30.3
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 5.8e-51 206.8 615 33.0
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.9e-50 204.5 627 31.6
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.8e-50 204.1 630 31.1
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.1e-49 202.6 946 29.2
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.9e-49 201.8 371 44.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 7.1e-49 199.9 811 30.0
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 9.3e-49 199.5 809 29.7
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.2e-48 199.1 834 30.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.1e-48 198.4 740 28.6
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.1e-48 198.4 786 30.0
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.1e-48 198.4 808 29.3
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 4.6e-48 197.2 799 29.9
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.9e-47 194.1 736 29.6
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 3.9e-47 194.1 825 30.4
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 5.1e-47 193.7 484 34.5
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 5.1e-47 193.7 837 31.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.9e-46 191.8 811 30.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 7.4e-46 189.9 652 30.5
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 6.2e-45 186.8 361 41.3
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 6.9e-44 183.3 778 29.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-43 181.8 794 30.1
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 4.5e-43 180.6 551 31.6
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 5.8e-43 180.3 432 37.0
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 5.8e-43 180.3 588 31.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.9e-43 179.5 805 30.1
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.2e-42 178.3 723 29.0
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.2e-42 178.3 803 29.0
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.9e-42 177.9 789 29.7
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.9e-41 175.3 845 27.9
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.2e-41 174.5 684 29.2
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 5.5e-41 173.7 635 33.9
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 6.0e-40 170.2 771 29.7
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.3e-39 169.1 644 29.7
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.3e-39 168.3 808 29.6
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.9e-39 167.5 759 28.7
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 6.7e-39 166.8 821 28.1
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 6.7e-39 166.8 624 30.9
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-38 166.0 760 28.7
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.9e-38 165.2 253 42.3
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 2.5e-38 164.9 720 30.8
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.7e-37 161.0 384 34.6
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 6.2e-37 160.2 300 38.3
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 9.0e-36 156.4 396 33.3
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.6e-35 154.8 439 33.9
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 5.8e-35 153.7 837 27.5
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.6e-35 153.3 605 28.4
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.0e-34 152.9 263 41.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.8e-34 151.0 343 36.4
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.5e-33 148.3 361 35.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.5e-33 148.3 175 53.1
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.6e-32 145.6 480 31.0
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 3.5e-32 144.4 391 32.2
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.3e-31 142.5 627 28.9
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.3e-31 141.7 558 29.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.3e-31 141.7 335 34.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 3.0e-31 141.4 477 30.8
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.9e-31 141.0 436 32.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.9e-31 141.0 340 36.2
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.9e-30 138.7 391 33.0
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 7.4e-30 136.7 128 57.8
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 7.4e-30 136.7 791 26.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.3e-29 136.0 430 31.6
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.1e-29 135.2 626 28.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.7e-29 134.4 420 31.4
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 6.3e-29 133.7 825 26.7
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 6.9e-28 130.2 403 31.5
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 4.5e-27 127.5 370 34.9
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.0e-26 126.3 774 28.8
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.9e-26 124.8 108 56.5
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 5.0e-26 124.0 480 28.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.4e-25 122.5 293 32.4
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.4e-25 122.5 420 31.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.2e-25 121.3 509 29.3
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 4.2e-25 120.9 346 33.5
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 7.2e-25 120.2 415 29.9
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 9.3e-25 119.8 834 25.5
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.6e-24 119.0 645 27.0
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.6e-24 117.9 353 29.5
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.0e-23 116.3 293 30.4
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.0e-23 116.3 193 37.8
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-23 116.3 415 29.2
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.0e-23 114.8 473 30.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 6.7e-23 113.6 547 26.3
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.9e-22 112.1 638 27.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.5e-22 111.7 248 33.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.6e-21 109.0 272 31.2
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 4.8e-21 107.5 638 26.2
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 6.3e-21 107.1 643 27.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-20 106.3 373 27.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-20 105.9 372 28.0
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.8e-20 105.5 200 38.5
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.1e-20 104.4 634 26.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.1e-20 104.4 637 27.5
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 5.3e-20 104.0 368 28.8
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 6.9e-20 103.6 376 27.7
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 6.9e-20 103.6 237 33.3
PSO541G1503 Papaver somniferum HOM05D003739 ORTHO05D003996 2.0e-19 102.1 175 40.6
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.6e-19 101.7 506 26.3
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 7.7e-19 100.1 198 39.4
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-18 99.8 287 28.6
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 2.9e-18 98.2 336 28.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.9e-18 98.2 263 31.6
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 8.5e-18 96.7 284 28.5
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 8.5e-18 96.7 140 40.0
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.5e-17 94.0 146 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.5e-17 94.0 146 40.4
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 7.2e-17 93.6 430 27.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.2e-17 93.6 169 41.4
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.1e-16 90.5 249 28.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.0e-15 88.2 62 64.5
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.0e-14 85.5 117 38.5
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.4e-14 84.3 149 35.6
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 7.4e-14 83.6 175 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.8e-13 81.6 298 28.2
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 6.3e-13 80.5 145 37.2
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 8.2e-13 80.1 84 44.0
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.1e-12 79.7 347 28.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-12 79.3 269 29.4
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.4e-12 78.6 96 39.6
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 3.1e-12 78.2 179 30.7
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 4.1e-12 77.8 84 51.2
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.4e-09 69.3 55 61.8
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.4e-09 69.3 425 25.2
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.5e-09 68.6 476 25.4
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-08 66.2 139 37.4
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.7e-08 65.1 96 38.5
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 7.9e-08 63.5 101 40.6
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 2.3e-07 62.0 204 30.9
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.1e-06 59.7 129 36.4


User provided reference genes

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