Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.1e-236 822.0 421 100.0
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.5e-229 798.5 421 97.1
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.4e-155 552.7 427 68.6
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 8.1e-148 527.7 426 66.7
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.1e-147 525.8 426 65.3
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.6e-146 522.7 421 65.8
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 2.9e-145 519.2 405 67.7
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 8.4e-145 517.7 420 64.0
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.7e-143 512.7 428 65.7
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.0e-142 510.8 424 64.9
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.3e-142 509.6 405 67.7
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 3.9e-142 508.8 427 64.2
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.3e-141 505.8 367 71.1
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.1e-140 503.1 401 68.1
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 4.8e-140 501.9 402 67.7
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 4.8e-140 501.9 401 67.6
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 4.8e-140 501.9 406 67.0
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 8.1e-140 501.1 401 67.1
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.1e-139 500.7 412 63.6
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.4e-139 500.4 404 65.6
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.4e-139 500.4 405 66.7
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.8e-138 495.0 407 64.6
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 9.9e-138 494.2 405 64.4
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-137 493.8 407 64.4
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.9e-136 490.0 445 59.3
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.2e-136 489.2 385 68.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 6.0e-135 485.0 405 63.0
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 7.9e-135 484.6 422 62.1
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.9e-134 482.3 426 62.4
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 8.7e-134 481.1 431 61.7
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 1.1e-133 480.7 461 57.3
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 7.4e-133 478.0 417 62.6
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 7.4e-133 478.0 401 62.6
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.1e-132 476.5 403 64.0
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 3.7e-132 475.7 403 62.3
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 6.2e-132 474.9 428 60.5
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 6.2e-132 474.9 421 62.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 6.9e-131 471.5 424 60.4
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 9.0e-131 471.1 477 55.8
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.6e-130 469.5 424 59.4
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 4.5e-130 468.8 400 61.8
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 7.6e-130 468.0 401 61.8
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 3.8e-129 465.7 404 61.6
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.1e-128 464.2 403 60.0
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.5e-128 463.0 414 61.1
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 4.2e-128 462.2 401 61.3
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 9.3e-128 461.1 400 61.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.1e-127 459.9 400 58.8
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 2.7e-127 459.5 427 59.3
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.5e-127 459.1 415 59.8
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 4.6e-127 458.8 425 58.1
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 7.9e-127 458.0 428 60.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.0e-126 457.6 403 60.3
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.3e-126 456.4 419 60.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 5.1e-126 455.3 432 58.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.5e-125 453.8 426 58.0
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.8e-124 449.5 424 59.4
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.8e-124 449.5 402 58.7
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 6.3e-124 448.4 348 67.2
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 6.3e-124 448.4 419 59.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 8.2e-124 448.0 407 61.4
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 2.4e-123 446.4 346 68.2
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 6.9e-123 444.9 424 58.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.5e-122 443.7 426 58.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.5e-122 443.7 418 59.3
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 3.4e-122 442.6 345 66.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.5e-122 442.2 409 59.4
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.9e-121 439.5 413 59.3
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 2.9e-121 439.5 413 59.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 5.0e-121 438.7 413 59.1
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-120 437.6 413 58.8
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 5.5e-120 435.3 424 57.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 7.2e-120 434.9 424 56.6
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.2e-119 434.1 379 62.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 4.6e-119 432.2 429 57.8
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 4.6e-119 432.2 431 55.9
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 7.9e-119 431.4 405 58.0
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.8e-118 430.3 429 57.6
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.8e-118 430.3 417 55.6
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.9e-118 429.1 429 57.3
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.9e-117 426.8 391 57.5
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.7e-116 423.7 440 53.2
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.7e-116 423.7 430 57.2
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 2.2e-116 423.3 395 58.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.8e-116 422.9 454 55.1
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 3.1e-115 419.5 429 55.2
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.6e-114 416.4 332 67.2
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.4e-114 416.0 409 56.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.5e-112 409.8 435 55.6
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 2.1e-111 406.8 365 59.7
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.6e-111 406.0 406 56.7
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 6.1e-111 405.2 444 53.8
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.0e-110 404.4 422 55.2
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.4e-110 404.1 364 61.0
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 8.2e-108 394.8 336 62.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.5e-106 390.6 309 68.0
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.6e-106 389.8 331 62.8
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 5.2e-102 375.6 341 58.7
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.3e-100 370.9 347 58.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-99 367.5 378 58.2
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.6e-98 364.0 302 63.2
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-97 360.1 289 67.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 2.9e-97 359.8 455 49.9
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-96 357.8 281 68.3
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.8e-94 350.5 336 58.0
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 5.2e-94 349.0 332 56.3
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.1e-88 331.3 293 61.1
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.6e-85 320.1 343 52.2
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.1e-75 286.6 371 49.9
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.2e-66 258.1 237 60.3
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 6.8e-62 242.3 424 36.8
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 9.2e-59 231.9 214 57.5
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.7e-58 230.3 429 37.1
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 7.8e-58 228.8 149 80.5
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 3.3e-56 223.4 128 86.7
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.4e-51 208.0 416 33.9
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.5e-48 198.0 324 40.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.8e-46 191.0 124 75.8
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 5.4e-27 126.3 100 67.0
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.1e-25 119.8 101 66.3
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 5.1e-25 119.8 93 68.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 8.1e-23 112.5 149 45.0
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.0e-21 107.8 56 91.1
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.8e-20 103.6 115 42.6
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.4e-19 101.7 104 49.0
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 3.0e-17 94.0 103 48.5
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 1.9e-11 74.7 144 33.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.7e-10 70.9 106 42.5


User provided reference genes

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