Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 4.3e-206 721.1 359 100.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.3e-202 709.5 359 98.3
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.3e-167 593.2 349 81.9
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.9e-159 565.1 353 78.2
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 1.1e-158 563.5 362 77.1
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 8.2e-157 557.4 360 76.4
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.3e-154 550.1 358 74.3
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 4.9e-154 548.1 355 74.9
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 6.5e-154 547.7 351 75.8
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 8.4e-154 547.4 355 75.5
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 5.5e-153 544.7 351 76.9
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 9.3e-153 543.9 353 74.8
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.7e-152 542.3 351 76.4
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.5e-152 542.0 357 75.1
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 3.5e-152 542.0 348 75.3
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.9e-152 540.8 348 75.9
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.9e-152 540.8 348 75.6
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.8e-151 539.7 362 74.6
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 3.0e-151 538.9 355 73.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 5.1e-151 538.1 349 73.9
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 5.1e-151 538.1 349 74.5
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 6.7e-151 537.7 348 74.7
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 8.7e-151 537.3 352 75.3
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.1e-150 537.0 355 74.4
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 2.5e-150 535.8 349 73.6
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 4.3e-150 535.0 352 74.7
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 2.2e-149 532.7 355 72.1
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.2e-149 532.7 351 73.8
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.8e-149 532.3 354 71.8
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 4.8e-149 531.6 357 74.2
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 6.3e-149 531.2 351 74.1
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 8.2e-149 530.8 354 71.5
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.4e-148 530.0 351 74.1
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.4e-148 530.0 351 74.1
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.4e-148 530.0 351 74.1
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.8e-148 529.6 351 74.1
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.4e-148 529.3 358 71.2
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 4.1e-148 528.5 357 73.7
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 5.3e-148 528.1 356 71.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 6.9e-148 527.7 351 73.8
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.4e-147 525.4 351 73.2
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 4.5e-147 525.0 351 73.5
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 7.7e-147 524.2 358 70.9
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.0e-146 523.9 351 73.2
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.3e-146 523.5 346 73.7
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.3e-146 523.5 358 70.7
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 3.8e-146 521.9 357 73.1
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 6.5e-146 521.2 348 72.4
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 6.5e-146 521.2 358 72.9
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.9e-145 519.6 358 72.3
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.5e-145 519.2 352 73.9
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 3.2e-145 518.8 360 71.4
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 4.2e-145 518.5 343 76.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 7.2e-145 517.7 349 72.5
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.1e-144 516.2 339 74.6
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 3.6e-144 515.4 355 72.7
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.6e-144 515.0 360 71.4
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 4.6e-144 515.0 354 72.0
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 6.1e-144 514.6 347 70.9
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 6.1e-144 514.6 350 71.4
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.0e-143 513.8 380 68.4
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.8e-143 513.1 348 71.3
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.8e-143 513.1 357 71.4
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.8e-143 513.1 357 71.4
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 5.1e-143 511.5 360 70.3
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 6.7e-143 511.1 354 72.0
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 8.8e-143 510.8 355 71.3
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 9.7e-142 507.3 351 71.2
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.3e-141 506.9 349 72.2
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.7e-141 505.4 358 70.4
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 8.2e-141 504.2 305 77.0
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.4e-140 503.4 348 70.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.4e-140 502.7 351 70.7
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 4.1e-140 501.9 338 72.5
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 6.9e-140 501.1 347 71.2
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 3.4e-139 498.8 351 70.1
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.4e-139 498.8 348 70.7
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.5e-139 498.4 348 70.7
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.7e-138 496.5 338 72.5
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 5.0e-138 495.0 369 67.5
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 5.0e-138 495.0 348 70.4
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 4.2e-137 491.9 339 72.0
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 4.2e-137 491.9 345 67.2
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 7.2e-137 491.1 357 68.1
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 2.1e-136 489.6 374 65.2
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.1e-132 477.2 357 68.9
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 7.7e-131 471.1 343 65.0
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.0e-130 470.7 398 62.3
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 4.7e-128 461.8 376 63.8
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 6.1e-128 461.5 304 71.7
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.0e-127 460.7 380 62.4
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.1e-126 457.2 315 72.1
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 9.7e-126 454.1 343 70.0
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.2e-125 453.0 338 68.3
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.7e-125 452.2 301 77.1
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 3.7e-125 452.2 305 69.8
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.6e-123 446.8 282 74.1
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.0e-122 444.1 334 69.5
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.0e-122 444.1 334 69.2
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.9e-122 442.6 351 64.7
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 2.9e-122 442.6 330 68.2
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 4.2e-121 438.7 296 73.0
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 7.2e-121 438.0 301 74.1
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 3.6e-120 435.6 347 66.3
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 4.7e-120 435.3 310 71.0
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.8e-117 426.0 298 71.8
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.6e-115 420.2 254 78.0
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 5.9e-115 418.3 361 62.3
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 7.7e-115 417.9 341 63.9
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 8.5e-114 414.5 254 77.2
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.5e-113 413.7 301 69.1
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 6.8e-111 404.8 358 58.4
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.4e-108 397.1 297 67.7
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 5.0e-106 388.7 305 63.3
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 4.7e-104 382.1 234 75.6
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.7e-101 373.6 391 54.2
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.7e-101 373.6 249 77.5
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.8e-101 372.9 347 54.5
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 6.3e-101 371.7 344 54.4
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 9.2e-100 367.9 257 73.5
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.0e-98 364.4 358 52.0
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.8e-95 353.6 249 73.5
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.0e-95 352.4 220 78.6
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 3.4e-94 349.4 331 54.7
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 5.8e-94 348.6 255 70.2
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 3.7e-93 345.9 252 70.2
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.9e-92 343.6 301 62.8
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 5.0e-90 335.5 237 75.1
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 8.6e-90 334.7 276 56.5
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 7.5e-86 321.6 186 87.6
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 5.4e-84 315.5 190 77.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.5e-78 297.4 252 62.3
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.3e-74 283.5 227 63.9
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.9e-73 280.4 196 71.4
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 5.6e-73 278.9 319 46.4
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 7.8e-59 231.9 389 40.4
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 3.4e-54 216.5 160 70.0
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.3e-42 177.9 186 54.3
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 4.8e-32 142.9 97 68.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 2.7e-27 127.1 73 72.6
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 4.6e-27 126.3 74 74.3
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 6.1e-27 125.9 73 72.6
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 6.1e-27 125.9 73 72.6
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.4e-26 124.8 73 74.0
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 2.8e-24 117.1 61 80.3
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 3.4e-22 110.2 120 51.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 7.2e-20 102.4 102 55.9
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 3.7e-08 63.5 40 77.5
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 7.7e-06 55.8 43 60.5


User provided reference genes

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