Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.6e-310 1068.5 544 100.0
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.4e-301 1038.9 544 97.4
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.1e-213 746.9 546 70.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.2e-213 745.3 547 69.8
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.6e-212 741.5 547 69.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.9e-200 701.0 542 66.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.0e-199 699.5 514 69.5
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.2e-197 692.2 542 66.1
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.3e-193 680.2 553 63.3
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-192 677.2 547 63.4
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.9e-191 671.4 511 66.7
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.0e-190 668.3 549 63.9
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 5.5e-189 664.8 527 64.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.7e-188 662.5 541 65.2
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.3e-187 659.4 599 58.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 3.3e-186 655.6 529 63.1
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.4e-186 655.2 578 59.3
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.8e-185 651.7 542 64.0
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.2e-185 651.0 582 58.4
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.1e-184 650.6 583 59.5
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.4e-184 649.4 526 64.6
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.1e-184 649.0 522 64.8
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 4.1e-184 648.7 486 67.7
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 5.3e-184 648.3 523 65.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 5.3e-184 648.3 524 63.5
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 7.0e-184 647.9 550 61.8
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 9.1e-184 647.5 552 62.7
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.5e-183 646.7 511 66.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 2.0e-183 646.4 559 61.5
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.9e-183 644.8 524 63.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.2e-182 642.9 551 61.9
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.8e-182 642.1 540 64.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.0e-182 641.7 515 65.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 5.0e-182 641.7 538 61.2
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.5e-182 641.0 530 63.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.9e-181 639.8 524 63.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.9e-181 639.8 568 58.8
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.2e-181 638.6 548 62.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.5e-181 638.3 522 61.9
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.6e-180 636.7 532 62.0
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 4.7e-180 635.2 565 58.8
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.3e-179 632.9 543 62.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.2e-179 631.7 518 63.5
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.5e-178 630.2 534 61.6
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.3e-177 627.1 531 63.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 2.2e-177 626.3 587 57.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.8e-177 625.9 557 60.1
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 8.2e-177 624.4 540 59.6
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.1e-176 624.0 527 62.8
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.8e-176 623.2 595 56.6
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.0e-175 619.8 535 60.9
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.9e-175 618.2 554 59.9
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 7.7e-175 617.8 518 62.4
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 8.5e-174 614.4 575 57.9
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.5e-173 612.8 597 56.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.2e-173 612.5 543 61.0
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.1e-172 609.8 547 59.6
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.0e-171 605.9 528 59.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.5e-170 601.3 539 59.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.3e-169 600.5 531 60.1
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.3e-169 600.5 528 60.8
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.2e-169 599.7 563 57.5
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.8e-169 599.4 537 59.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.3e-169 597.8 539 59.4
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.0e-168 594.7 548 57.7
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 9.1e-168 594.3 640 54.1
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 5.9e-167 591.7 583 54.5
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.2e-166 589.7 555 56.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.9e-166 589.3 556 57.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.9e-165 586.6 551 56.1
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.2e-164 583.9 478 63.0
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.1e-164 583.2 558 56.5
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.4e-163 580.5 532 57.5
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 5.7e-162 575.1 540 58.3
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 7.5e-162 574.7 433 67.0
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 2.2e-161 573.2 491 59.9
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.1e-160 569.3 517 59.0
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 4.1e-160 568.9 518 57.3
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.7e-159 566.2 369 72.9
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-157 560.8 557 56.2
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 4.2e-157 558.9 519 58.4
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.2e-157 558.1 541 56.9
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.1e-156 555.1 567 54.1
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.0e-154 550.1 541 56.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.6e-154 549.7 545 56.3
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.7e-154 548.5 550 56.2
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 5.7e-154 548.5 545 56.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 9.8e-154 547.7 549 54.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.2e-153 546.6 541 54.3
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.8e-153 546.2 546 55.9
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.3e-153 545.0 550 53.3
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-152 543.5 546 56.0
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.1e-152 542.3 368 69.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 5.4e-152 542.0 585 52.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.2e-151 540.8 545 55.4
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.7e-150 537.0 543 54.1
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 3.9e-150 535.8 562 53.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-149 534.3 572 52.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 6.1e-148 528.5 538 53.9
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.1e-147 526.2 530 53.6
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.0e-147 525.8 562 52.0
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.5e-146 523.9 537 52.7
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 6.4e-145 518.5 410 62.9
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 7.8e-143 511.5 561 50.6
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.7e-142 510.4 545 53.4
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.7e-142 510.4 527 52.8
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 8.6e-142 508.1 519 52.4
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.2e-140 501.9 521 54.1
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 6.4e-137 491.9 532 51.7
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.6e-135 487.3 517 51.8
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.6e-135 485.7 554 48.7
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.1e-133 481.1 512 49.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.5e-133 479.9 537 48.4
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.6e-132 477.2 315 70.5
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 6.4e-129 465.3 529 51.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.2e-128 463.0 484 53.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 3.2e-128 463.0 486 50.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 5.4e-128 462.2 299 72.2
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.2e-124 448.7 470 51.1
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 9.9e-122 441.4 322 65.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 6.4e-121 438.7 410 54.1
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 4.8e-116 422.5 349 57.6
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.9e-115 418.7 270 73.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.5e-114 417.5 486 47.7
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 8.4e-113 411.8 579 41.6
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-112 411.4 574 42.5
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-112 411.4 356 55.3
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.4e-112 410.2 562 41.5
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.4e-112 410.2 574 42.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.2e-112 409.8 596 40.9
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.2e-112 409.5 362 53.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 9.3e-112 408.3 564 42.0
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.2e-111 407.9 497 48.5
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.1e-111 407.1 563 41.6
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.6e-111 406.0 282 65.6
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 6.0e-111 405.6 362 53.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.8e-111 405.2 348 55.7
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 6.6e-110 402.1 609 39.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.1e-107 393.3 307 63.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.2e-106 391.3 400 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.9e-105 386.7 545 40.0
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 5.4e-104 382.5 576 40.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 5.4e-104 382.5 576 40.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 8.7e-102 375.2 457 48.6
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-101 374.8 585 39.5
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.1e-101 374.8 585 39.5
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 6.2e-100 369.0 299 56.2
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.2e-96 356.3 228 72.4
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.0e-91 338.6 208 77.4
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 5.0e-89 332.8 393 49.9
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.9e-88 330.9 208 75.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.1e-80 305.1 297 48.1
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 4.3e-77 293.1 287 57.8
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 4.7e-71 273.1 578 35.8
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.6e-69 267.3 554 36.1
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.3e-62 244.2 263 55.5
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 3.3e-61 240.4 347 45.5
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.0e-54 217.2 314 44.9
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 2.2e-52 211.1 605 30.7
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.9e-49 200.7 163 58.3
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.4e-46 191.8 125 74.4
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.0e-42 177.9 282 36.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 9.5e-40 169.1 138 60.1
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.4e-35 155.2 101 69.3
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.3e-32 142.9 82 79.3
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 7.3e-32 142.9 258 41.1
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.7e-28 131.7 82 73.2
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 9.2e-27 125.9 68 83.8
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 9.2e-27 125.9 93 58.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 8.6e-25 119.4 106 51.9
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.1e-23 112.8 65 80.0
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.4e-20 103.2 276 33.0
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.5e-16 92.0 230 36.5
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 2.1e-10 71.6 210 34.8


User provided reference genes

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