Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 2.8e-236 821.6 429 100.0
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 6.9e-211 737.3 430 90.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.4e-86 324.3 445 46.3
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 7.6e-85 318.5 467 45.0
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.3e-84 317.8 467 45.0
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 4.3e-72 276.2 450 40.4
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.9e-68 263.5 453 41.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 8.5e-68 261.9 497 38.2
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 3.2e-67 260.0 453 39.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.4e-65 254.6 498 37.6
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.1e-65 252.7 449 39.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.5e-64 250.4 449 39.4
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 7.4e-64 248.8 449 38.8
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 6.9e-62 242.3 449 39.4
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 9.1e-62 241.9 454 37.7
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.7e-60 237.7 484 37.2
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 5.5e-59 232.6 466 36.7
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 9.4e-59 231.9 446 39.2
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.7e-58 230.3 446 39.5
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.3e-57 227.3 445 38.9
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 8.8e-57 225.3 458 37.1
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.3e-56 223.4 496 35.5
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.7e-56 222.6 461 38.2
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 9.7e-56 221.9 490 36.3
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.3e-55 221.5 490 36.3
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.8e-55 220.3 452 37.2
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-55 220.3 485 35.5
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 6.3e-55 219.2 449 38.8
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.4e-54 217.2 555 33.9
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.1e-54 216.9 448 35.5
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.5e-53 213.4 489 35.8
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 7.7e-53 212.2 520 36.7
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.2e-52 210.7 543 32.2
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 2.9e-52 210.3 500 36.2
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.9e-51 207.6 445 37.5
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.5e-51 207.2 456 36.2
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 3.2e-51 206.8 491 34.0
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 4.2e-51 206.5 458 36.2
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.2e-50 204.9 494 33.6
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.8e-49 201.1 485 34.6
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.2e-49 199.5 522 33.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 8.8e-49 198.7 531 32.8
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 2.6e-48 197.2 474 36.7
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.6e-48 197.2 536 33.6
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 3.3e-48 196.8 517 32.3
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 4.4e-48 196.4 533 33.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.3e-47 194.9 505 33.1
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.3e-47 194.9 475 33.5
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 3.1e-46 190.3 495 33.3
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 5.3e-46 189.5 511 31.7
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 7.0e-46 189.1 500 32.8
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 9.1e-46 188.7 165 62.4
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.2e-45 188.3 471 35.5
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.6e-45 188.0 525 31.6
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.9e-45 186.0 504 33.1
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.3e-44 184.9 464 37.7
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.7e-44 184.5 515 31.7
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 6.5e-44 182.6 457 34.6
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 6.5e-44 182.6 485 31.8
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 8.5e-44 182.2 515 31.3
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.1e-43 181.8 512 31.4
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.5e-43 181.4 479 33.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 3.2e-43 180.3 499 32.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.2e-42 178.3 533 32.3
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.6e-42 177.9 349 40.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.1e-42 177.6 160 58.8
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 4.7e-42 176.4 462 35.1
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 1.4e-41 174.9 495 32.7
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-41 174.9 516 29.5
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.8e-41 172.6 153 57.5
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 8.8e-41 172.2 491 33.6
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.2e-40 171.8 514 32.9
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.4e-40 170.2 524 31.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 5.7e-40 169.5 393 34.9
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 5.7e-40 169.5 165 55.8
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 7.0e-38 162.5 462 33.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 9.1e-38 162.2 180 51.7
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.6e-37 161.4 485 31.3
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 2.0e-37 161.0 206 48.1
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.7e-37 159.1 444 32.0
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.5e-35 154.1 149 55.0
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 7.2e-35 152.5 543 27.8
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 9.4e-35 152.1 515 31.1
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 6.8e-33 146.0 456 32.2
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.2e-32 145.2 472 29.9
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.5e-32 144.8 135 59.3
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 7.5e-32 142.5 464 30.8
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 9.8e-32 142.1 114 66.7
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 6.3e-31 139.4 476 30.3
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.1e-30 138.7 466 30.3
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.1e-30 138.7 466 30.3
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.4e-30 137.5 539 28.2
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 2.4e-30 137.5 513 29.2
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 3.1e-30 137.1 511 28.4
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 1.6e-29 134.8 493 28.4
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 2.0e-29 134.4 487 28.1
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.5e-29 133.7 321 34.6
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 5.9e-29 132.9 522 28.2
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 7.7e-29 132.5 503 29.8
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 2.5e-27 127.5 512 29.1
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 4.7e-26 123.2 448 28.1
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-25 121.3 419 31.3
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 3.0e-25 120.6 89 65.2
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 4.9e-23 113.2 425 28.9
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 6.6e-20 102.8 406 26.8
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 6.6e-20 102.8 317 31.9
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 1.9e-19 101.3 480 25.4
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.1e-18 97.8 405 28.1
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.8e-18 97.4 74 62.2
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 6.2e-18 96.3 181 37.6
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 6.2e-18 96.3 61 72.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.0e-17 95.5 117 47.0
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 8.9e-17 92.4 255 31.8
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.6e-16 90.9 420 26.7
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 4.4e-16 90.1 425 27.3
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 8.3e-15 85.9 161 36.6
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.0e-13 81.3 79 48.1
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 2.5e-11 74.3 217 30.9
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 3.3e-11 73.9 82 41.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 4.3e-11 73.6 87 42.5
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.6e-10 71.6 88 42.0
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 2.8e-10 70.9 81 45.7
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.6e-10 70.5 76 46.1
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 8.1e-10 69.3 79 41.8
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.1e-10 69.3 86 41.9
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.1e-09 68.9 85 38.8
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.1e-09 68.9 97 38.1
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.8e-09 68.2 80 38.8
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.8e-09 68.2 102 34.3
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.3e-09 67.8 84 38.1
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 2.3e-09 67.8 76 46.1
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 6.8e-09 66.2 82 37.8
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 8.9e-09 65.9 79 39.2
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.9e-09 65.9 86 39.5
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 8.9e-09 65.9 120 33.3
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.2e-08 65.5 97 34.0
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 1.5e-08 65.1 127 37.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.0e-08 64.7 69 44.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.0e-08 64.7 85 35.3
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 2.6e-08 64.3 82 34.1
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 2.6e-08 64.3 86 38.4
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 3.4e-08 63.9 216 27.8
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 3.4e-08 63.9 58 50.0
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 4.4e-08 63.5 84 38.1
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 4.4e-08 63.5 85 34.1
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 5.8e-08 63.2 213 29.1
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 5.8e-08 63.2 138 28.3
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 9.8e-08 62.4 63 46.0
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 9.8e-08 62.4 82 36.6
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 9.8e-08 62.4 78 44.9
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.3e-07 62.0 172 27.3
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 1.7e-07 61.6 56 46.4
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.7e-07 61.6 307 25.4
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 3.7e-07 60.5 63 44.4
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 3.7e-07 60.5 214 27.6
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 4.9e-07 60.1 81 40.7
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.9e-07 60.1 38 76.3
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 4.9e-07 60.1 76 39.5
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 4.9e-07 60.1 76 40.8
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 6.4e-07 59.7 60 45.0
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 8.3e-07 59.3 114 31.6
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 8.3e-07 59.3 178 28.7
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.9e-06 58.2 329 24.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.9e-06 58.2 177 30.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.4e-06 57.8 96 32.3
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 2.4e-06 57.8 183 26.2
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 4.1e-06 57.0 360 24.2
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 4.1e-06 57.0 91 41.8
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 4.1e-06 57.0 112 28.6
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 4.1e-06 57.0 69 43.5
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 5.4e-06 56.6 70 41.4
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 5.4e-06 56.6 183 26.2
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 7.1e-06 56.2 85 35.3
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 9.2e-06 55.8 94 29.8


User provided reference genes

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