Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-74 282.3 145 100.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.4e-67 258.8 146 93.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-42 176.8 102 88.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.3e-41 173.3 102 86.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 4.2e-35 151.8 96 78.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.1e-34 149.4 86 84.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.5e-34 148.7 89 80.9
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.0e-33 147.1 86 83.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.0e-33 147.1 87 81.6
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.3e-33 146.7 84 84.5
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.3e-33 146.0 86 83.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.0e-33 145.6 98 72.4
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.0e-33 145.6 90 77.8
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 3.9e-33 145.2 86 81.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 3.9e-33 145.2 86 81.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 5.1e-33 144.8 81 86.4
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.1e-33 144.8 86 82.6
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 8.7e-33 144.1 85 80.0
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.1e-32 143.7 105 71.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.1e-32 143.7 95 75.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.1e-32 143.7 95 75.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.5e-32 143.3 87 79.3
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.5e-32 143.3 86 81.4
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.5e-32 143.3 107 70.1
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.5e-32 143.3 96 74.0
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.5e-32 143.3 108 72.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.9e-32 142.9 87 78.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.9e-32 142.9 87 78.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.9e-32 142.9 87 78.2
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.9e-32 142.9 88 79.5
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.9e-32 142.9 85 82.4
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.5e-32 142.5 108 71.3
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.5e-32 142.5 110 68.2
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.5e-32 142.5 87 80.5
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.3e-32 142.1 102 67.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.3e-32 141.7 87 79.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-32 141.7 85 81.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.6e-32 141.4 85 80.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.6e-32 141.4 103 69.9
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 7.4e-32 141.0 87 79.3
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 7.4e-32 141.0 87 78.2
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 7.4e-32 141.0 86 81.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 7.4e-32 141.0 100 70.0
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 9.6e-32 140.6 88 79.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 9.6e-32 140.6 88 79.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.3e-31 140.2 104 69.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.3e-31 140.2 85 80.0
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.3e-31 140.2 86 79.1
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.6e-31 139.8 100 70.0
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.6e-31 139.8 94 73.4
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.1e-31 139.4 105 72.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.1e-31 139.4 94 76.6
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.8e-31 139.0 87 78.2
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.7e-31 138.7 87 79.3
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-31 138.3 100 70.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-31 138.3 100 70.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-31 138.3 100 70.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.2e-31 137.9 86 79.1
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 6.2e-31 137.9 89 79.8
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 6.2e-31 137.9 86 77.9
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.2e-31 137.9 96 75.0
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.1e-30 137.1 85 77.6
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.1e-30 137.1 87 78.2
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.4e-30 136.7 104 69.2
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-30 136.7 100 69.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.4e-30 136.7 100 69.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.8e-30 136.3 106 64.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.4e-30 136.0 87 75.9
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.4e-30 136.0 86 77.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.1e-30 135.6 92 73.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 4.0e-30 135.2 103 67.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.0e-30 135.2 103 67.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.0e-30 135.2 85 77.6
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.0e-30 135.2 75 86.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.0e-30 135.2 86 75.6
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 6.9e-30 134.4 90 73.3
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 6.9e-30 134.4 86 74.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 9.0e-30 134.0 96 72.9
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.0e-30 134.0 87 74.7
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 9.0e-30 134.0 90 73.3
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-29 133.7 105 65.7
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.2e-29 133.7 104 66.3
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-29 133.3 96 72.9
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-29 133.3 96 72.9
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.5e-29 133.3 85 76.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.5e-29 133.3 92 70.7
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-29 133.3 88 73.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.5e-29 133.3 90 73.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.0e-29 132.9 101 67.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.0e-29 132.9 89 74.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.0e-29 132.9 96 70.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.0e-29 132.9 89 74.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.6e-29 132.5 109 64.2
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.4e-29 132.1 110 64.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.5e-29 131.7 101 66.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 4.5e-29 131.7 87 77.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 4.5e-29 131.7 87 72.4
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 5.8e-29 131.3 88 76.1
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 7.6e-29 131.0 85 72.9
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 7.6e-29 131.0 88 72.7
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.3e-28 130.2 84 75.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.3e-28 130.2 102 67.6
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.7e-28 129.8 110 63.6
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.7e-28 129.8 90 72.2
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 2.2e-28 129.4 81 72.8
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.9e-28 129.0 84 73.8
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.9e-28 129.0 110 59.1
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 3.8e-28 128.6 89 70.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 6.4e-28 127.9 82 76.8
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.4e-28 127.9 113 61.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.4e-27 125.9 107 58.9
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 4.2e-27 125.2 85 70.6
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-26 123.6 112 59.8
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-26 123.6 132 51.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.5e-26 122.1 102 61.8
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.9e-26 120.9 82 68.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.9e-26 120.9 82 68.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.8e-25 119.8 95 66.3
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.3e-25 119.4 84 70.2
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.9e-25 118.6 128 53.9
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.5e-24 116.7 82 67.1
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.4e-24 114.4 76 76.3
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.4e-24 114.4 86 66.3
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.7e-23 112.1 85 63.5
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.4e-22 109.4 85 64.7
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.4e-22 109.4 87 64.4
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 3.1e-22 109.0 92 62.0
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.9e-22 107.8 94 62.8
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-22 107.5 94 62.8
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 9.0e-22 107.5 100 57.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.0e-21 106.3 85 63.5
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-20 103.6 108 54.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.7e-20 103.2 88 63.6
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.2e-20 102.8 67 79.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.6e-18 96.7 84 63.1
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.1e-18 96.3 73 67.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.5e-18 95.5 78 66.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 6.0e-18 94.7 59 76.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 3.0e-17 92.4 74 64.9
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.1e-17 91.7 72 65.3
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.1e-17 91.7 72 65.3
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.1e-16 90.5 62 74.2
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.9e-16 89.7 70 65.7
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.8e-15 85.9 61 68.9
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.8e-14 83.2 60 71.7
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.8e-14 83.2 69 56.5
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.3e-14 81.6 73 58.9
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.2e-13 80.5 79 49.4
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.6e-13 79.3 51 74.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.0e-12 77.4 54 72.2
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.0e-12 77.4 56 64.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.1e-11 73.9 71 50.7
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-11 71.2 63 60.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.6e-10 68.9 56 60.7
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 6.1e-10 68.2 63 54.0
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.0e-09 65.9 46 69.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 3.9e-09 65.5 52 61.5
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-08 63.9 72 50.0
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.4e-08 61.2 49 65.3
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 9.7e-08 60.8 65 44.6
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.2e-07 59.7 43 62.8
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 6.3e-07 58.2 119 29.4
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-06 57.0 56 53.6


User provided reference genes

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