Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.4e-259 898.3 442 100.0
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 4.5e-250 867.5 442 97.1
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 3.9e-209 731.5 439 80.0
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 5.6e-208 727.6 440 78.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.2e-205 719.9 436 79.1
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.4e-203 712.2 436 79.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.7e-202 708.8 438 77.6
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.3e-201 705.7 435 77.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.5e-200 703.0 438 76.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.9e-200 702.6 438 76.3
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.3e-200 701.8 436 78.2
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 4.8e-199 698.0 438 76.7
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 6.2e-199 697.6 439 75.4
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 6.2e-199 697.6 435 76.6
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 8.1e-199 697.2 441 75.3
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 5.3e-198 694.5 440 76.4
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 5.3e-198 694.5 437 76.7
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 3.4e-197 691.8 437 75.3
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.7e-196 689.5 438 75.3
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.7e-196 689.5 427 75.6
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.9e-196 688.7 443 74.9
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 6.4e-196 687.6 437 76.0
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 6.4e-196 687.6 439 74.5
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.1e-195 686.8 438 75.8
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.4e-195 686.4 441 74.6
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.9e-195 686.0 439 74.9
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.9e-195 686.0 436 74.8
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.9e-195 686.0 438 75.1
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 3.2e-195 685.3 435 75.6
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 4.2e-195 684.9 434 75.1
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 7.1e-195 684.1 438 75.3
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 9.3e-195 683.7 436 73.2
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 9.3e-195 683.7 435 74.0
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.6e-194 682.9 437 75.5
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.6e-194 682.9 442 74.2
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 2.1e-194 682.6 436 72.9
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.3e-193 679.9 440 75.2
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.3e-193 679.9 435 74.3
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.8e-193 679.5 427 74.7
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 2.3e-193 679.1 437 74.6
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 3.9e-193 678.3 438 74.9
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 5.1e-193 677.9 438 74.0
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 5.1e-193 677.9 429 74.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 6.7e-193 677.6 442 72.6
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.1e-192 676.8 440 73.9
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.9e-192 676.0 441 74.6
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 3.3e-192 675.2 441 73.9
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 4.3e-192 674.9 420 76.2
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 7.4e-192 674.1 439 73.6
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 9.6e-192 673.7 427 73.5
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.3e-191 673.3 438 75.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.6e-191 672.9 441 72.8
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.6e-191 672.9 428 74.5
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.8e-191 672.2 439 74.0
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 2.8e-191 672.2 438 74.0
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 2.8e-191 672.2 422 77.3
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 2.8e-191 672.2 435 74.5
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 3.7e-191 671.8 438 74.0
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 3.7e-191 671.8 435 72.9
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 4.8e-191 671.4 439 72.9
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.1e-190 670.2 439 74.0
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 3.1e-190 668.7 430 72.1
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 9.9e-189 663.7 455 71.4
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.3e-188 663.3 441 73.2
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-188 663.3 449 71.7
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.7e-188 662.9 436 72.0
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 3.8e-188 661.8 444 71.8
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 8.4e-188 660.6 440 71.1
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 4.2e-187 658.3 440 71.6
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 9.3e-187 657.1 428 74.3
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.2e-186 656.8 425 75.1
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.6e-186 656.4 418 73.9
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.1e-186 656.0 427 72.4
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-184 650.2 439 72.2
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.5e-184 649.8 425 72.0
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.3e-184 648.7 442 71.0
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 7.4e-184 647.5 419 72.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 2.8e-183 645.6 435 70.1
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.4e-182 643.3 390 77.4
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.8e-182 642.9 430 70.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.4e-182 642.5 422 70.9
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.4e-182 642.5 465 68.8
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.6e-181 639.0 427 70.7
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.7e-180 636.3 441 69.4
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.1e-179 633.6 431 71.5
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.5e-179 632.5 450 71.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-178 629.8 449 69.5
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.6e-178 629.8 430 68.8
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.0e-177 625.5 424 71.5
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.8e-175 619.0 434 66.8
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.2e-173 613.6 472 65.7
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.1e-170 602.8 392 74.7
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 6.7e-169 597.8 496 61.9
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.3e-168 595.5 397 72.5
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.3e-167 593.6 479 60.8
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.7e-164 583.2 375 73.1
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 7.9e-162 574.3 446 64.8
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 4.5e-157 558.5 472 60.0
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 5.9e-157 558.1 434 60.4
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 5.9e-157 558.1 421 66.0
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.1e-154 549.7 361 74.2
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 4.7e-154 548.5 538 55.4
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 4.8e-151 538.5 364 73.1
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 7.0e-150 534.6 438 59.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.6e-149 533.5 435 57.5
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.8e-148 528.9 466 59.4
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 9.4e-147 524.2 424 61.3
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.8e-145 520.0 437 61.3
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.9e-140 502.7 430 55.3
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.1e-138 496.5 440 58.6
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.0e-132 477.6 421 58.2
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.3e-132 476.5 435 53.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 2.3e-124 449.9 412 53.4
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.2e-118 427.9 269 75.8
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.6e-117 425.6 244 79.9
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 2.7e-101 373.2 388 46.6
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.1e-97 361.3 244 72.5
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 4.2e-94 349.4 515 37.7
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 2.1e-93 347.1 444 43.0
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.7e-92 344.0 193 80.8
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.3e-90 337.8 191 80.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 1.6e-90 337.4 280 61.4
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 2.1e-85 320.5 244 66.8
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.6e-61 241.1 167 70.1
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 2.0e-56 224.2 198 59.1
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 3.3e-51 206.8 420 32.1
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.7e-50 204.5 169 59.2
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 8.5e-47 192.2 189 53.4
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 5.1e-44 183.0 243 44.4
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 3.3e-43 180.3 141 61.0
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 2.8e-42 177.2 195 49.7
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.8e-42 177.2 152 59.2
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.4e-41 174.1 132 62.1
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 9.1e-41 172.2 113 67.3
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 5.9e-40 169.5 92 78.3
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 1.8e-33 147.9 145 52.4
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 7.0e-33 146.0 96 69.8
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 5.9e-32 142.9 86 73.3
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 8.0e-29 132.5 125 56.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 8.8e-28 129.0 129 56.6
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.7e-26 124.8 126 54.0
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 2.5e-22 110.9 126 47.6
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.8e-20 102.8 93 53.8
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 8.3e-18 95.9 66 68.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 3.3e-14 84.0 64 67.2
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.1e-13 81.3 67 59.7
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.4e-12 78.6 65 63.1
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 7.5e-11 72.8 192 31.8
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.1e-09 68.9 51 66.7
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 7.8e-08 62.8 82 43.9
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.5e-06 58.5 55 54.5
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.5e-06 58.5 55 54.5
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 3.3e-06 57.4 53 54.7
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.3e-06 57.0 37 67.6


User provided reference genes

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