Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.3e-235 819.3 407 100.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 6.3e-222 773.9 407 93.4
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 9.7e-207 723.4 404 86.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.3e-206 723.0 404 87.1
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.6e-161 572.0 404 68.8
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 7.1e-157 557.8 406 67.0
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 6.6e-155 551.2 404 66.1
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.6e-154 548.1 404 65.6
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 8.1e-153 544.3 405 65.7
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.1e-152 542.3 405 65.9
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.9e-152 541.2 405 64.9
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 6.9e-152 541.2 405 64.7
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.0e-152 540.8 405 65.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.2e-151 540.4 405 64.2
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 4.4e-151 538.5 408 64.2
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 5.8e-151 538.1 405 63.7
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.8e-150 535.4 402 65.2
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.8e-150 535.4 402 65.2
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 8.4e-150 534.3 404 64.9
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 8.4e-150 534.3 404 64.9
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.4e-149 533.5 404 64.4
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 4.2e-149 531.9 405 64.4
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.2e-149 531.9 405 64.4
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.2e-149 531.9 405 64.2
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 4.2e-149 531.9 405 64.0
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 4.2e-149 531.9 405 64.4
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 4.2e-149 531.9 405 64.2
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.4e-149 531.6 405 63.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.0e-147 527.3 407 63.1
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.7e-147 526.6 402 63.4
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 3.0e-147 525.8 407 62.7
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.1e-147 525.0 405 63.2
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.7e-147 524.2 398 64.6
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.9e-146 523.1 398 64.3
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 4.3e-146 521.9 405 63.7
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 4.3e-146 521.9 405 62.7
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.6e-146 521.5 405 62.7
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 7.3e-146 521.2 406 64.0
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 9.6e-146 520.8 406 63.8
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.3e-145 520.4 405 62.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.3e-145 520.4 405 63.2
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.6e-145 520.0 405 63.2
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.1e-145 519.6 405 62.0
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.8e-145 518.5 404 62.4
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 8.1e-145 517.7 405 63.5
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 8.1e-145 517.7 405 62.5
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.4e-144 516.9 400 63.8
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.8e-144 516.5 402 62.2
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.4e-144 516.2 405 60.7
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 5.3e-144 515.0 407 62.4
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 5.3e-144 515.0 405 62.7
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 2.0e-143 513.1 405 61.5
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.4e-143 512.3 405 62.0
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.7e-142 510.0 405 63.2
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 2.2e-142 509.6 404 61.4
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 2.9e-142 509.2 405 62.0
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.9e-142 509.2 399 61.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 3.8e-142 508.8 405 62.0
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.8e-142 508.8 405 62.0
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 3.8e-142 508.8 405 61.5
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 3.8e-142 508.8 405 62.0
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 8.4e-142 507.7 398 62.3
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.9e-141 506.5 405 60.0
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.4e-141 506.1 399 61.9
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 3.2e-141 505.8 405 62.0
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.6e-140 503.4 406 61.1
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.6e-140 503.4 406 61.3
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.7e-140 502.7 398 60.8
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.7e-140 502.7 405 60.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 4.6e-140 501.9 398 61.3
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.3e-139 500.4 407 61.2
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.8e-139 500.0 436 59.2
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 2.3e-139 499.6 406 59.9
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.3e-139 499.6 404 60.1
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 3.0e-139 499.2 398 61.8
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 3.9e-139 498.8 405 59.5
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.1e-139 498.4 409 59.7
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.1e-139 498.4 409 59.7
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.1e-139 498.4 409 59.7
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 5.1e-139 498.4 406 59.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.1e-138 497.3 428 58.9
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.5e-138 496.9 408 59.3
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.9e-138 496.5 405 60.7
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.5e-138 496.1 405 58.8
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 3.3e-138 495.7 398 60.3
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 4.3e-138 495.4 405 60.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 4.3e-138 495.4 408 59.3
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 4.3e-138 495.4 399 60.4
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 5.6e-138 495.0 409 59.4
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 5.6e-138 495.0 398 60.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.4e-138 494.6 405 61.7
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 9.6e-138 494.2 409 58.9
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 9.6e-138 494.2 403 60.5
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 6.2e-137 491.5 406 59.1
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 6.2e-137 491.5 408 59.1
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 6.2e-137 491.5 399 59.4
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.4e-136 490.3 406 58.6
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.8e-136 490.0 403 59.3
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 9.0e-136 487.6 404 60.4
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.6e-135 486.1 403 57.8
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.4e-135 485.7 399 58.4
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 5.8e-135 485.0 400 60.5
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.7e-134 483.4 348 67.8
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.2e-134 483.0 404 59.7
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 8.4e-134 481.1 405 59.5
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 2.5e-133 479.6 396 60.1
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 2.5e-133 479.6 356 65.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 4.2e-133 478.8 398 59.5
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 9.3e-133 477.6 399 58.6
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 9.3e-133 477.6 403 58.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 6.0e-132 474.9 491 51.9
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 8.2e-129 464.5 398 58.8
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 4.0e-128 462.2 398 58.8
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.6e-124 450.3 405 56.0
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.6e-124 450.3 400 55.0
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.7e-122 441.0 396 53.5
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.8e-121 438.7 396 53.5
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 3.1e-120 436.0 374 58.3
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 9.0e-120 434.5 413 51.8
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.3e-118 430.6 406 53.7
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 3.7e-113 412.5 404 53.5
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 6.3e-113 411.8 310 64.8
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.3e-107 393.3 376 52.9
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.7e-102 377.1 312 58.7
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 9.1e-96 354.8 272 65.1
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.6e-95 353.2 404 45.5
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.7e-94 350.5 272 63.2
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 3.2e-93 346.3 310 55.5
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 6.3e-89 332.0 409 42.8
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.7e-86 323.9 410 42.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.7e-86 323.9 262 60.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.2e-81 307.0 406 46.3
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 8.9e-75 285.0 399 39.8
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 4.9e-65 252.7 247 54.7
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.1e-64 251.5 437 35.7
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 8.0e-60 235.3 176 64.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.0e-60 235.3 206 52.4
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 2.6e-58 230.3 161 70.2
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.5e-53 214.5 170 60.0
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 2.1e-52 210.7 185 56.8
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 3.4e-50 203.4 174 55.7
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.2e-48 195.3 193 53.4
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.6e-47 194.5 135 67.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 7.8e-47 192.2 339 33.0
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 4.7e-44 183.0 148 58.8
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.1e-40 171.8 113 71.7
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 7.8e-31 139.0 93 69.9
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 2.8e-28 130.6 97 62.9
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 6.9e-19 99.4 96 54.2
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.1e-16 92.0 231 29.4
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 3.7e-12 77.0 70 52.9
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 3.1e-11 73.9 84 51.2
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.6e-07 60.1 63 49.2


User provided reference genes

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