Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.9e-173 612.5 315 100.0
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.4e-168 596.3 315 97.8
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 7.0e-112 407.9 315 67.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.6e-110 401.4 318 67.0
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 2.8e-108 396.0 317 65.6
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.7e-108 395.2 287 70.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.9e-105 386.0 317 64.4
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.1e-104 382.1 277 70.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 4.1e-104 382.1 284 70.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.6e-103 380.2 310 65.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.6e-103 380.2 254 75.2
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.0e-103 379.8 315 63.8
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.7e-103 379.4 315 62.2
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.7e-103 379.4 315 62.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.9e-103 378.3 300 65.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 5.9e-103 378.3 277 69.3
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.9e-103 378.3 290 66.2
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.7e-102 376.7 290 65.9
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.7e-102 376.7 290 65.9
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 3.0e-102 375.9 254 73.6
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.9e-101 373.2 316 60.4
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.9e-101 373.2 306 64.4
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 3.3e-101 372.5 315 63.2
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 7.3e-101 371.3 266 70.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 9.5e-101 370.9 315 62.9
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 9.5e-101 370.9 265 69.8
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.2e-100 370.5 288 65.6
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.1e-100 369.8 303 63.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 4.7e-100 368.6 284 65.8
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 6.2e-100 368.2 312 63.1
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 8.0e-100 367.9 260 71.2
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.4e-99 367.1 302 62.9
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 2.3e-99 366.3 275 68.0
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 3.1e-99 365.9 263 69.2
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.0e-99 365.5 265 70.2
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 5.2e-99 365.2 279 65.9
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 6.8e-99 364.8 291 67.4
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 6.8e-99 364.8 323 61.0
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.2e-98 364.0 315 62.2
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.0e-98 363.2 272 68.0
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 5.8e-98 361.7 302 62.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 5.8e-98 361.7 301 63.1
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 5.8e-98 361.7 311 63.7
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 7.5e-98 361.3 302 62.9
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 9.8e-98 360.9 257 68.5
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.7e-97 360.1 257 70.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 6.4e-97 358.2 311 62.1
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 8.3e-97 357.8 262 69.8
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.4e-96 357.1 262 70.2
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.9e-96 356.7 297 63.0
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.4e-96 356.3 273 67.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.4e-96 356.3 304 61.8
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.0e-96 354.8 305 62.3
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.0e-96 354.8 305 62.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.6e-95 353.6 256 69.1
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.6e-95 353.6 240 72.9
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.7e-95 352.8 318 58.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.5e-95 352.4 263 66.9
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.6e-95 352.1 300 60.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.6e-95 352.1 263 69.2
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.0e-95 351.7 297 63.6
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 7.8e-95 351.3 305 60.0
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-94 349.7 300 61.3
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 8.6e-94 347.8 312 60.6
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 8.6e-94 347.8 311 60.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.5e-93 346.3 300 60.0
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 2.5e-93 346.3 300 59.3
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.3e-93 345.5 293 61.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 4.3e-93 345.5 306 58.5
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 5.6e-93 345.1 286 63.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 7.3e-93 344.7 303 62.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 9.5e-93 344.4 284 62.0
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 9.5e-93 344.4 262 64.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.6e-92 343.6 304 58.9
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.6e-92 343.6 278 60.8
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 2.8e-92 342.8 300 59.0
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 4.7e-92 342.0 300 59.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 4.7e-92 342.0 246 70.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.2e-92 341.7 305 58.0
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.2e-92 341.7 305 58.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.4e-91 340.5 301 58.5
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.4e-91 340.5 266 63.5
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.3e-91 339.7 301 58.5
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.1e-91 339.3 376 50.8
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.8e-91 338.2 261 64.8
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.8e-91 338.2 258 64.3
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 6.8e-91 338.2 295 57.6
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.8e-91 338.2 258 64.3
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.8e-91 338.2 300 58.7
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 8.9e-91 337.8 251 64.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 8.9e-91 337.8 306 57.8
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.2e-90 337.4 238 69.7
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.2e-90 337.4 257 65.8
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.5e-90 337.0 300 58.0
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.4e-90 335.9 257 65.4
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.5e-90 334.7 294 59.2
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.9e-89 332.8 254 64.6
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 3.7e-89 332.4 297 58.2
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 3.7e-89 332.4 226 71.7
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 4.9e-89 332.0 295 60.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.9e-89 332.0 302 57.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.2e-88 329.3 318 55.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.2e-88 329.3 238 68.1
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 7.1e-88 328.2 268 60.4
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.0e-86 322.8 295 60.3
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.9e-86 322.4 303 57.1
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.9e-85 320.1 302 56.6
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 3.3e-85 319.3 239 66.5
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.2e-84 317.4 289 56.1
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.1e-84 316.6 284 61.6
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 3.6e-84 315.8 288 57.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.4e-83 313.9 288 56.9
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.2e-83 312.0 305 53.8
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.2e-82 310.8 249 63.1
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.8e-82 308.5 273 59.0
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 4.9e-81 305.4 310 54.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 6.4e-81 305.1 221 68.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 3.2e-80 302.8 373 46.4
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 5.4e-80 302.0 315 53.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 9.2e-80 301.2 242 62.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.8e-79 298.1 346 51.7
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.3e-78 296.6 257 58.4
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.1e-78 295.4 356 51.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.2e-76 290.8 319 51.1
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.2e-76 290.8 281 54.8
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 6.2e-76 288.5 242 61.6
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.1e-75 286.2 302 53.3
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.4e-74 282.3 254 56.7
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.8e-73 279.3 247 55.9
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.4e-73 278.5 229 62.9
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.4e-72 277.3 265 58.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 3.8e-65 252.7 219 58.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-62 243.8 249 49.4
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.1e-60 236.9 458 37.6
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.7e-60 236.1 289 45.3
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.9e-59 231.9 175 64.6
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 7.6e-58 228.4 224 53.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 6.7e-54 215.3 221 53.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 4.3e-53 212.6 235 46.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 9.6e-53 211.5 316 41.5
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.1e-52 210.3 133 77.4
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 6.2e-52 208.8 246 45.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 6.0e-47 192.2 145 66.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 6.0e-47 192.2 135 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.4e-40 171.0 191 46.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.5e-37 160.2 126 64.3
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.0e-30 138.3 162 47.5
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.8e-22 110.9 107 49.5
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.5e-21 107.8 76 72.4
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.8e-20 102.8 79 62.0
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.0e-14 83.2 193 32.1
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.2e-14 82.8 72 61.1
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.3e-13 80.1 72 52.8
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.4e-11 74.7 70 44.3
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.0e-09 68.6 52 75.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 8.5e-09 65.5 52 59.6
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.7e-07 59.7 281 25.6
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 8.0e-07 58.9 280 26.8
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.8e-06 57.8 103 35.0
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 2.3e-06 57.4 206 26.7
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 3.0e-06 57.0 103 34.0
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 5.2e-06 56.2 43 76.7
PSO782G4319 Papaver somniferum HOM05D002234 ORTHO05D002254 6.8e-06 55.8 213 30.5


User provided reference genes

Program Settings