Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 1.1e-159 566.6 291 100.0
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 6.8e-154 547.4 291 96.9
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 4.7e-86 322.0 276 63.0
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 8.0e-86 321.2 271 65.3
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 2.5e-79 299.7 281 56.9
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 6.1e-78 295.0 275 58.2
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 3.4e-76 289.3 274 56.9
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 1.3e-75 287.3 219 65.3
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 2.2e-75 286.6 257 59.9
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 2.8e-75 286.2 271 55.7
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 4.8e-75 285.4 274 58.0
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 8.3e-75 284.6 218 67.9
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 2.4e-74 283.1 203 69.5
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 7.0e-74 281.6 283 55.8
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 2.0e-73 280.0 215 65.1
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 3.5e-73 279.3 219 64.4
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 5.9e-73 278.5 196 67.9
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 3.8e-72 275.8 248 59.3
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 6.6e-72 275.0 210 66.7
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 6.6e-72 275.0 262 58.4
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 6.6e-72 275.0 262 56.5
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 2.5e-71 273.1 280 54.6
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 3.3e-71 272.7 263 56.3
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.3e-71 272.7 220 62.3
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.3e-71 272.7 218 63.3
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 4.2e-71 272.3 250 56.4
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 4.2e-71 272.3 270 56.7
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 5.5e-71 271.9 254 58.3
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 5.5e-71 271.9 200 68.5
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 7.2e-71 271.6 237 62.0
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 9.5e-71 271.2 221 62.9
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 1.2e-70 270.8 220 61.8
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 1.2e-70 270.8 257 57.6
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 2.8e-70 269.6 213 65.7
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 2.8e-70 269.6 262 58.0
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 2.8e-70 269.6 262 58.0
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 3.6e-70 269.2 258 53.1
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 3.6e-70 269.2 249 57.4
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 6.1e-70 268.5 219 64.4
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 1.4e-69 267.3 254 58.3
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 3.0e-69 266.2 201 62.7
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 5.2e-69 265.4 270 56.7
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 5.2e-69 265.4 218 62.8
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 6.8e-69 265.0 199 67.3
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 6.8e-69 265.0 210 61.9
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 8.9e-69 264.6 166 74.7
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 1.5e-68 263.8 197 67.5
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 2.0e-68 263.5 211 65.9
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 7.5e-68 261.5 212 64.6
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 7.5e-68 261.5 270 52.2
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 9.8e-68 261.2 201 68.7
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.3e-67 260.8 267 53.9
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 2.2e-67 260.0 203 66.0
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 6.3e-67 258.5 279 53.4
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 6.3e-67 258.5 271 55.0
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 8.3e-67 258.1 238 58.0
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.1e-66 257.7 210 64.3
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.4e-66 256.5 207 63.8
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 2.4e-66 256.5 223 60.1
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 2.4e-66 256.5 288 50.3
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 3.2e-66 256.1 207 60.9
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 9.2e-66 254.6 247 55.9
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 9.2e-66 254.6 209 61.7
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 1.6e-65 253.8 270 54.4
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 2.0e-65 253.4 258 57.0
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 4.5e-65 252.3 262 51.9
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.5e-65 252.3 209 61.2
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 4.5e-65 252.3 261 55.2
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.3e-64 250.8 260 53.8
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.3e-64 250.8 206 61.7
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 2.3e-64 250.0 202 61.4
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 2.3e-64 250.0 206 61.7
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 6.6e-64 248.4 237 58.6
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.1e-63 247.7 206 61.2
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.5e-63 247.3 262 51.9
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 4.3e-63 245.7 213 62.4
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 4.3e-63 245.7 272 51.1
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 5.6e-63 245.4 268 51.5
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 7.3e-63 245.0 293 49.1
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.2e-62 244.2 272 50.7
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 8.0e-62 241.5 229 57.2
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 1.0e-61 241.1 255 53.7
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 4.0e-61 239.2 230 57.4
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 8.9e-61 238.0 190 64.2
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 4.4e-60 235.7 332 44.6
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 2.2e-59 233.4 202 57.9
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.4e-58 230.7 404 39.1
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 7.0e-58 228.4 312 43.6
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 1.6e-57 227.3 243 51.9
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 1.0e-56 224.6 205 57.1
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.9e-51 206.5 216 52.8
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 2.4e-50 203.4 194 52.6
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 4.1e-50 202.6 273 48.4
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 1.9e-47 193.7 161 57.1
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 2.5e-47 193.4 162 54.9
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 6.8e-45 185.3 224 50.0
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 4.9e-43 179.1 157 57.3
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 1.4e-42 177.6 171 50.9
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 7.1e-42 175.3 259 45.6
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 2.0e-36 157.1 179 45.8
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.3e-30 137.9 196 46.4
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 4.0e-29 132.9 90 70.0
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 1.2e-28 131.3 136 52.9
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 4.2e-26 122.9 160 43.1
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 9.3e-26 121.7 153 45.8
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 1.3e-24 117.9 141 48.2
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 5.1e-24 115.9 188 39.9
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 7.3e-23 112.1 102 54.9
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 7.3e-23 112.1 159 43.4
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 2.9e-19 100.1 101 53.5
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.4e-18 97.8 128 42.2
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.9e-11 73.6 76 53.9
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 1.4e-10 71.2 81 48.1
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.5e-10 70.5 90 43.3
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 2.7e-09 67.0 134 37.3
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.3e-08 64.7 142 33.8


User provided reference genes

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