Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4243 Papaver somniferum HOM05D007206 ORTHO05D009176 2.5e-95 352.1 172 100.0
PSO063G3127 Papaver somniferum HOM05D007206 ORTHO05D009176 1.4e-90 336.3 170 95.9
Aqoxy1G01032 Aquilegia oxysepala HOM05D007206 ORTHO05D009176 3.8e-35 152.1 168 48.8
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 1.2e-33 147.1 170 46.5
Hma1.2p1_0564F.1_g179170 Hydrangea macrophylla HOM05D007206 ORTHO05D009176 3.0e-32 142.5 168 46.4
THA.LOC104826925 Tarenaya hassleriana HOM05D007206 ORTHO05D009176 3.0e-32 142.5 167 47.9
Lsat_1_v5_gn_6_28201 Lactuca sativa HOM05D007206 ORTHO05D009176 8.7e-32 141.0 168 47.6
MD12G1102700 Malus domestica HOM05D007206 ORTHO05D009176 8.7e-32 141.0 172 43.6
ECA233G5177 Erigeron canadensis HOM05D007206 ORTHO05D009176 1.5e-31 140.2 140 52.9
SGA_v2.0_scaffold657G53380 Striga asiatica HOM05D007206 ORTHO05D009176 1.9e-31 139.8 168 45.8
AL3G21200 Arabidopsis lyrata HOM05D007206 ORTHO05D009176 2.5e-31 139.4 169 43.8
Cc06_g04800 Coffea canephora HOM05D007206 ORTHO05D009176 7.4e-31 137.9 167 46.1
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 7.4e-31 137.9 148 47.3
HanXRQChr13g0400551 Helianthus annuus HOM05D007206 ORTHO05D009176 7.4e-31 137.9 172 45.3
QL07p041366 Quercus lobata HOM05D007206 ORTHO05D009176 7.4e-31 137.9 173 48.6
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 9.7e-31 137.5 167 44.3
Aa31LG3G2410 Aethionema arabicum HOM05D007206 ORTHO05D009176 1.3e-30 137.1 169 43.2
C03p43430 Brassica napus HOM05D007206 ORTHO05D009176 1.3e-30 137.1 169 43.2
BraA03t12750Z Brassica rapa HOM05D007206 ORTHO05D009176 1.3e-30 137.1 169 43.8
Sp3g08280 Schrenkiella parvula HOM05D007206 ORTHO05D009176 1.3e-30 137.1 169 43.8
A03p35770 Brassica napus HOM05D007206 ORTHO05D009176 1.6e-30 136.7 169 42.6
Carub.0003s0903 Capsella rubella HOM05D007206 ORTHO05D009176 1.6e-30 136.7 169 43.2
BcaC01g04253 Brassica carinata HOM05D007206 ORTHO05D009176 2.2e-30 136.3 169 43.2
BolC3t16614H Brassica oleracea HOM05D007206 ORTHO05D009176 2.2e-30 136.3 169 43.2
RcHm_v2.0_Chr3g0471351 Rosa chinensis HOM05D007206 ORTHO05D009176 2.2e-30 136.3 163 43.6
TWI77G0103 Tripterygium wilfordii HOM05D007206 ORTHO05D009176 2.2e-30 136.3 143 50.3
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.8e-30 136.0 167 43.7
Haze_19480 Corylus avellana HOM05D007206 ORTHO05D009176 3.7e-30 135.6 169 44.4
MD14G1096900 Malus domestica HOM05D007206 ORTHO05D009176 3.7e-30 135.6 141 46.1
HPP92_008498 Vanilla planifolia HOM05D007206 ORTHO05D009176 4.8e-30 135.2 151 46.4
CiPaw.09G005300 Carya illinoinensis HOM05D007206 ORTHO05D009176 6.3e-30 134.8 163 46.6
CARHR084450 Cardamine hirsuta HOM05D007206 ORTHO05D009176 8.2e-30 134.4 169 42.6
AT3G09925 Arabidopsis thaliana HOM05D007206 ORTHO05D009176 1.8e-29 133.3 169 43.2
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.4e-29 132.9 166 42.8
PGSC0003DMG400012983 Solanum tuberosum HOM05D007206 ORTHO05D009176 2.4e-29 132.9 163 44.8
Manes.09G048990 Manihot esculenta HOM05D007206 ORTHO05D009176 3.1e-29 132.5 140 45.7
Thhalv10021649m.g Eutrema salsugineum HOM05D007206 ORTHO05D009176 4.1e-29 132.1 169 41.4
Actinidia32469 Actinidia chinensis HOM05D007206 ORTHO05D009176 6.9e-29 131.3 164 46.3
CSS0049694 Camellia sinensis var. sinensis HOM05D007206 ORTHO05D009176 6.9e-29 131.3 139 48.9
BcaB03g11581 Brassica carinata HOM05D007206 ORTHO05D009176 9.0e-29 131.0 158 43.0
A05p39080 Brassica napus HOM05D007206 ORTHO05D009176 1.2e-28 130.6 169 42.0
BraA05t22700Z Brassica rapa HOM05D007206 ORTHO05D009176 1.2e-28 130.6 169 42.0
COL.COLO4_22256 Corchorus olitorius HOM05D007206 ORTHO05D009176 1.2e-28 130.6 160 41.9
Solyc09g008590.4 Solanum lycopersicum HOM05D007206 ORTHO05D009176 1.5e-28 130.2 163 44.8
Sopen01g017760 Solanum pennellii HOM05D007206 ORTHO05D009176 2.0e-28 129.8 163 44.8
Duzib093G2029 Durio zibethinus HOM05D007206 ORTHO05D009176 2.6e-28 129.4 164 40.9
DCAR_017648 Daucus carota HOM05D007206 ORTHO05D009176 5.9e-28 128.3 168 45.8
Migut.J00478 Erythranthe guttata HOM05D007206 ORTHO05D009176 5.9e-28 128.3 168 42.9
C05p58110 Brassica napus HOM05D007206 ORTHO05D009176 1.3e-27 127.1 169 41.4
BolC5t34468H Brassica oleracea HOM05D007206 ORTHO05D009176 1.3e-27 127.1 169 41.4
PSO063G5977 Papaver somniferum HOM05D007206 ORTHO05D009176 2.9e-27 125.9 162 42.0
Sabra06G0093700 Salix brachista HOM05D007206 ORTHO05D009176 3.8e-27 125.6 165 44.2
Eucgr.K02418 Eucalyptus grandis HOM05D007206 ORTHO05D009176 5.0e-27 125.2 145 43.4
CAN.G1759.3 Capsicum annuum HOM05D007206 ORTHO05D009176 6.5e-27 124.8 140 46.4
Potri.006G119100 Populus trichocarpa HOM05D007206 ORTHO05D009176 1.1e-26 124.0 167 43.1
Hund01087 Selenicereus undatus HOM05D007206 ORTHO05D009176 1.9e-26 123.2 176 39.8
Ciclev10006960m.g Citrus clementina HOM05D007206 ORTHO05D009176 2.5e-26 122.9 140 42.9
Oeu017000.1 Olea europaea HOM05D007206 ORTHO05D009176 2.5e-26 122.9 168 40.5
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 3.2e-26 122.5 161 43.5
VMungo1383G0088 Vigna mungo HOM05D007206 ORTHO05D009176 3.2e-26 122.5 161 40.4
Lalb_Chr25g0288781 Lupinus albus HOM05D007206 ORTHO05D009176 5.5e-26 121.7 177 42.9
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 7.2e-26 121.3 167 41.3
Thecc.05G075700 Theobroma cacao HOM05D007206 ORTHO05D009176 9.3e-26 120.9 166 38.6
Lj2C124T14 Lonicera japonica HOM05D007206 ORTHO05D009176 1.2e-25 120.6 168 44.6
Cpa.g.sc5.124 Carica papaya HOM05D007206 ORTHO05D009176 2.7e-25 119.4 167 38.3
SalBow3G1834 Salvia bowleyana HOM05D007206 ORTHO05D009176 4.6e-25 118.6 167 39.5
Glyma.19G188400 Glycine max HOM05D007206 ORTHO05D009176 1.8e-24 116.7 168 41.7
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 1.8e-24 116.7 168 42.9
Sed0016601 Sechium edule HOM05D007206 ORTHO05D009176 2.3e-24 116.3 143 43.4
AUR62043339 Chenopodium quinoa HOM05D007206 ORTHO05D009176 3.0e-24 115.9 162 38.3
Gohir.D01G129600 Gossypium hirsutum HOM05D007206 ORTHO05D009176 3.0e-24 115.9 162 38.9
MBI18_g24930_MAGBIO Magnolia biondii HOM05D007206 ORTHO05D009176 5.1e-24 115.2 145 42.8
Phvul.001G183600 Phaseolus vulgaris HOM05D007206 ORTHO05D009176 5.1e-24 115.2 161 38.5
MELO3C009409.2 Cucumis melo HOM05D007206 ORTHO05D009176 6.7e-24 114.8 140 44.3
ClCG10G019630 Citrullus lanatus HOM05D007206 ORTHO05D009176 8.7e-24 114.4 168 39.3
CsaV3_3G036450 Cucumis sativus L. HOM05D007206 ORTHO05D009176 1.1e-23 114.0 163 41.1
Ca_08938_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.5e-23 113.6 167 39.5
Ca_30111_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.5e-23 113.6 167 39.5
Gorai.002G160400 Gossypium raimondii HOM05D007206 ORTHO05D009176 1.5e-23 113.6 162 38.3
Glyma.03G188300 Glycine max HOM05D007206 ORTHO05D009176 1.9e-23 113.2 169 39.6
Psat0s4599g0080 Pisum sativum HOM05D007206 ORTHO05D009176 4.3e-23 112.1 151 41.7
AUR62022783 Chenopodium quinoa HOM05D007206 ORTHO05D009176 7.4e-23 111.3 162 39.5
Lj1g0012469 Lotus japonicus HOM05D007206 ORTHO05D009176 9.7e-23 110.9 168 38.7
Sc02g0001330 Simmondsia chinensis HOM05D007206 ORTHO05D009176 1.3e-22 110.5 157 38.2
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 1.7e-22 110.2 173 36.4
EL10Ac9g22544 Beta vulgaris HOM05D007206 ORTHO05D009176 5.3e-21 105.1 160 36.9
BcaC05g29720 Brassica carinata HOM05D007206 ORTHO05D009176 5.3e-21 105.1 139 41.0
CANSAT80G1624 Cannabis sativa HOM05D007206 ORTHO05D009176 6.9e-21 104.8 163 38.7
Peaxi162Scf01195g00005 Petunia axillaris HOM05D007206 ORTHO05D009176 2.2e-19 99.8 170 37.1
DCAR_017650 Daucus carota HOM05D007206 ORTHO05D009176 6.5e-19 98.2 137 40.1
Dinv35836 Davidia involucrata HOM05D007206 ORTHO05D009176 6.5e-19 98.2 104 51.0
Atru.chr8.1702 Acer truncatum HOM05D007206 ORTHO05D009176 8.5e-19 97.8 168 36.3
Os10g0546100 Oryza sativa ssp. japonica HOM05D007206 ORTHO05D009176 3.0e-16 89.4 135 38.5
Zm00001eb022730 Zea mays HOM05D007206 ORTHO05D009176 5.1e-16 88.6 133 39.8
arahy.Tifrunner.gnm1.ann1.06CJ1U Arachis hypogaea HOM05D007206 ORTHO05D009176 9.7e-15 84.3 119 42.9
arahy.Tifrunner.gnm1.ann1.A01TPE Arachis hypogaea HOM05D007206 ORTHO05D009176 2.8e-14 82.8 119 42.0
FAN09G1747 Fragaria x ananassa HOM05D007206 ORTHO05D022624 2.4e-13 79.7 89 40.4
GSVIVG01033719001 Vitis vinifera HOM05D007206 ORTHO05D009176 1.7e-11 73.6 91 41.8
GSVIVG01033715001 Vitis vinifera HOM05D007206 ORTHO05D009176 3.8e-11 72.4 85 43.5
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 5.0e-11 72.0 125 38.4
Eucgr.F02194 Eucalyptus grandis HOM05D007206 ORTHO05D009176 2.7e-09 66.2 107 40.2
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 3.6e-09 65.9 111 38.7
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 4.7e-09 65.5 136 32.4
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 8.0e-09 64.7 139 32.4
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 1.0e-08 64.3 136 33.1
Nitab4.5_0012561g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.0e-08 64.3 134 32.1
Nitab4.5_0000666g0120 Nicotiana tabacum HOM05D005469 ORTHO05D001701 1.4e-08 63.9 139 30.2
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 1.8e-08 63.5 143 34.3
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.0e-08 62.8 139 31.7
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 3.0e-08 62.8 139 33.8
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.9e-08 62.4 139 31.7
Nitab4.5_0000058g0190 Nicotiana tabacum HOM05D005469 ORTHO05D001701 3.9e-08 62.4 139 29.5
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 5.2e-08 62.0 139 33.1
Gohir.D11G118100 Gossypium hirsutum HOM05D002284 ORTHO05D002427 6.7e-08 61.6 135 31.1
SalBow3G1256 Salvia bowleyana HOM05D005469 ORTHO05D001701 6.7e-08 61.6 154 29.2
Migut.F00654 Erythranthe guttata HOM05D005469 ORTHO05D001701 8.8e-08 61.2 160 30.0
Nitab4.5_0001652g0160 Nicotiana tabacum HOM05D003009 ORTHO05D001701 8.8e-08 61.2 126 32.5
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 1.1e-07 60.8 138 31.2
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 1.1e-07 60.8 136 31.6
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 2.6e-07 59.7 139 31.7
CAN.G529.8 Capsicum annuum HOM05D003009 ORTHO05D001701 3.3e-07 59.3 84 44.0
AUR62012286 Chenopodium quinoa HOM05D005469 ORTHO05D001701 3.3e-07 59.3 134 29.9
ClCG07G004420 Citrullus lanatus HOM05D005469 ORTHO05D001701 3.3e-07 59.3 131 32.8
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 3.3e-07 59.3 136 30.9
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 4.4e-07 58.9 136 32.4
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 4.4e-07 58.9 133 33.1
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 4.4e-07 58.9 133 33.1
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 5.7e-07 58.5 133 33.1
Solyc02g078060.1 Solanum lycopersicum HOM05D003009 ORTHO05D001701 5.7e-07 58.5 110 36.4
AUR62022927 Chenopodium quinoa HOM05D005469 ORTHO05D001701 7.4e-07 58.2 134 29.9
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 9.7e-07 57.8 136 30.9
Sed0020461 Sechium edule HOM05D005469 ORTHO05D001701 1.7e-06 57.0 156 26.3
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 2.2e-06 56.6 147 30.6
Gohir.A11G113050 Gossypium hirsutum HOM05D002284 ORTHO05D002427 2.8e-06 56.2 134 30.6
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 6.3e-06 55.1 132 30.3


User provided reference genes

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