Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.2e-252 875.2 444 100.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 9.5e-240 833.2 444 95.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 5.5e-78 295.8 513 40.9
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.2e-69 268.1 508 36.4
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.0e-68 263.5 522 36.6
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 5.7e-67 259.2 519 36.6
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 9.7e-67 258.5 516 36.6
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.7e-66 256.5 507 36.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.1e-62 245.0 515 35.1
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.9e-62 244.2 516 35.7
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 7.9e-61 238.8 514 36.8
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.7e-58 231.1 521 36.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 4.1e-57 226.5 518 34.6
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.6e-51 207.2 531 32.2
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 4.4e-51 206.5 512 34.4
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.7e-50 204.5 529 33.6
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.8e-50 203.0 486 33.1
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.8e-49 201.1 443 34.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.8e-49 201.1 334 39.2
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 4.1e-49 199.9 503 35.0
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 7.7e-48 195.7 460 33.0
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 3.8e-47 193.4 470 32.8
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.1e-46 191.8 537 31.8
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.5e-46 190.7 495 31.3
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.1e-45 187.6 466 31.8
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.1e-45 187.6 540 32.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 8.0e-45 185.7 479 31.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.0e-44 185.3 515 31.5
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.0e-44 185.3 487 30.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.8e-44 184.5 507 31.8
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.5e-43 181.4 457 32.2
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 9.8e-43 178.7 426 34.3
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.3e-42 178.3 463 32.4
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 4.8e-42 176.4 380 32.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.1e-41 175.3 517 31.7
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.4e-41 174.1 419 33.2
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 3.1e-41 173.7 600 27.3
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.0e-40 171.0 627 27.8
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.0e-40 171.0 585 28.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.7e-40 170.6 443 32.3
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 3.5e-40 170.2 523 30.8
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.5e-40 169.9 427 34.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 4.5e-40 169.9 585 28.2
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 5.9e-40 169.5 453 32.5
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.3e-39 168.3 402 32.8
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.9e-39 167.2 208 42.8
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.1e-38 165.2 526 29.7
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.5e-38 164.9 588 27.9
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.9e-38 164.5 252 41.3
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 5.5e-38 162.9 241 40.2
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 5.5e-38 162.9 586 28.5
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.4e-36 158.3 556 28.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.3e-36 157.5 545 30.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 4.0e-36 156.8 276 38.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 5.2e-36 156.4 276 38.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.2e-35 155.2 198 44.9
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 3.7e-34 150.2 252 39.7
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.4e-33 148.3 213 41.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.8e-33 147.9 232 40.9
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.4e-33 147.5 210 41.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.4e-33 147.5 493 31.0
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.1e-33 147.1 197 44.2
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 4.1e-33 146.7 604 28.1
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 4.5e-32 143.3 477 29.4
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.9e-32 142.9 210 41.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 7.7e-32 142.5 426 31.9
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-31 141.7 283 33.9
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 2.3e-31 141.0 184 44.0
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.8e-31 140.2 210 41.0
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.2e-29 135.2 206 41.3
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 8.0e-29 132.5 475 30.9
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.0e-28 132.1 571 28.9
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.3e-28 131.0 372 29.8
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 5.2e-28 129.8 349 33.5
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.2e-28 129.8 368 33.4
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.2e-28 129.8 455 28.6
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 8.9e-28 129.0 186 41.4
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.2e-27 128.6 375 33.6
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.5e-27 128.3 202 40.6
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.0e-27 127.9 478 30.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.0e-27 127.9 398 33.7
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.4e-27 126.7 361 35.2
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 7.5e-27 125.9 185 41.1
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.3e-26 125.2 490 26.3
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.2e-26 124.4 201 40.3
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.7e-26 123.6 186 41.9
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.9e-26 123.2 361 29.6
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 8.3e-26 122.5 377 30.5
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.8e-25 121.3 190 40.5
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.8e-25 121.3 440 28.2
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 5.4e-25 119.8 356 32.9
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 9.2e-25 119.0 201 38.8
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 9.2e-25 119.0 201 38.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.5e-24 117.1 235 34.5
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 4.6e-24 116.7 184 40.8
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.9e-24 116.3 371 30.2
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.0e-23 115.5 370 29.5
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 2.3e-23 114.4 184 40.2
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.9e-23 114.0 250 34.0
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.9e-23 114.0 261 33.0
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 3.9e-23 113.6 370 29.7
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.1e-22 112.1 381 30.2
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 7.3e-22 109.4 438 26.7
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-21 108.6 184 37.5
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.1e-21 107.8 184 37.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 4.7e-21 106.7 114 50.0
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.0e-20 105.5 184 37.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 1.0e-20 105.5 184 37.5
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.0e-20 105.5 184 37.5
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.8e-20 102.8 489 27.2
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 8.9e-20 102.4 184 37.0
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.4e-19 100.5 151 39.1
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.9e-18 97.4 292 28.8
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.2e-17 94.0 370 27.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 3.0e-15 87.4 297 31.6
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.5e-14 84.3 300 28.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.5e-14 84.3 300 28.7
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.0e-11 74.7 113 39.8
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.2e-09 65.9 319 23.5
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 7.8e-08 62.8 116 36.2
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.0e-07 60.8 291 27.8
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 5.1e-07 60.1 105 37.1
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.6e-07 59.7 509 22.8


User provided reference genes

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