Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 7.3e-48 194.9 245 100.0
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.4e-45 185.7 247 92.3
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.6e-15 87.4 235 77.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 8.1e-15 85.1 62 69.4
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.4e-13 79.3 62 69.4
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.4e-12 75.1 56 69.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.4e-12 75.1 56 69.6
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 8.4e-12 75.1 54 70.4
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.4e-12 75.1 54 70.4
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.4e-12 75.1 54 70.4
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.4e-12 75.1 54 70.4
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 8.4e-12 75.1 227 77.5
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 8.4e-12 75.1 54 70.4
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.1e-11 74.7 55 67.3
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.4e-11 73.6 62 64.5
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.2e-11 73.2 54 68.5
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 3.2e-11 73.2 62 64.5
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.2e-11 73.2 56 67.9
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.2e-11 73.2 62 64.5
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 4.2e-11 72.8 227 77.1
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.6e-10 70.9 56 66.1
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.7e-10 70.1 56 64.3
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.7e-10 70.1 56 64.3
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 3.5e-10 69.7 54 64.8
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 4.6e-10 69.3 56 64.3
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 6.0e-10 68.9 49 73.5
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 6.0e-10 68.9 58 63.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.3e-09 67.8 56 62.5
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.3e-09 67.8 56 62.5
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 1.7e-09 67.4 56 62.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.3e-09 67.0 51 70.6
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.3e-09 67.0 51 70.6
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.0e-09 66.6 42 76.2
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.0e-09 66.6 56 62.5
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.0e-09 66.6 56 60.7
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.9e-09 66.2 61 60.7
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 5.1e-09 65.9 61 62.3
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.1e-09 65.9 48 70.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 5.1e-09 65.9 56 58.9
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.6e-09 65.5 58 62.1
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 6.6e-09 65.5 55 67.3
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 8.7e-09 65.1 48 66.7
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 8.7e-09 65.1 48 70.8
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 8.7e-09 65.1 48 66.7
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.5e-08 64.3 58 58.6
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.5e-08 64.3 48 64.6
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.9e-08 63.9 58 58.6
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.9e-08 63.9 58 60.3
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 1.9e-08 63.9 139 78.4
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.9e-08 63.9 48 66.7
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.5e-08 63.5 48 64.6
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.5e-08 63.5 48 66.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.5e-08 63.5 48 64.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 3.3e-08 63.2 48 64.6
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.3e-08 63.2 48 64.6
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 3.3e-08 63.2 48 64.6
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 3.3e-08 63.2 48 64.6
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 4.3e-08 62.8 48 64.6
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 4.3e-08 62.8 50 62.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 5.6e-08 62.4 48 62.5
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 5.6e-08 62.4 48 62.5
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 5.6e-08 62.4 53 58.5
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 5.6e-08 62.4 48 62.5
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 5.6e-08 62.4 48 62.5
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 5.6e-08 62.4 48 62.5
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 5.6e-08 62.4 48 62.5
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 7.3e-08 62.0 48 64.6
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 7.3e-08 62.0 54 63.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 7.3e-08 62.0 50 62.0
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 9.6e-08 61.6 57 61.4
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.3e-07 61.2 49 65.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.3e-07 61.2 49 65.3
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.6e-07 60.8 48 62.5
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.6e-07 60.8 48 64.6
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 2.1e-07 60.5 50 60.0
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.1e-07 60.5 48 60.4
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.1e-07 60.5 48 64.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.1e-07 60.5 42 61.9
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.1e-07 60.5 54 59.3
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.8e-07 60.1 56 57.1
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 2.8e-07 60.1 226 79.6
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.8e-07 60.1 58 56.9
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 2.8e-07 60.1 58 53.4
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.8e-07 60.1 56 60.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.8e-07 60.1 48 62.5
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 2.8e-07 60.1 49 63.3
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 3.6e-07 59.7 48 64.6
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 3.6e-07 59.7 49 63.3
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.6e-07 59.7 43 62.8
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.6e-07 59.7 48 66.7
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.6e-07 59.7 53 56.6
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.6e-07 59.7 53 56.6
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.6e-07 59.7 53 56.6
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 4.8e-07 59.3 55 54.5
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 4.8e-07 59.3 48 60.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 4.8e-07 59.3 60 58.3
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 6.2e-07 58.9 46 60.9
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 6.2e-07 58.9 56 57.1
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 6.2e-07 58.9 48 60.4
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 6.2e-07 58.9 48 60.4
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.2e-07 58.9 51 62.7
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 8.1e-07 58.5 54 59.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 8.1e-07 58.5 48 60.4
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 8.1e-07 58.5 48 60.4
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.1e-07 58.5 56 57.1
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.1e-06 58.2 48 58.3
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-06 58.2 60 55.0
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-06 58.2 48 58.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.4e-06 57.8 49 63.3
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.4e-06 57.8 51 60.8
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.8e-06 57.4 48 66.7
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 1.8e-06 57.4 47 63.8
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.8e-06 57.4 48 66.7
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.4e-06 57.0 46 63.0
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.4e-06 57.0 48 56.2
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.4e-06 57.0 51 60.8
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.1e-06 56.6 56 57.1
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-06 56.6 62 51.6
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.1e-06 56.6 62 51.6
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 3.1e-06 56.6 48 58.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.1e-06 56.6 51 60.8
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 3.1e-06 56.6 48 58.3
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 4.0e-06 56.2 56 51.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 4.0e-06 56.2 45 68.9
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 60.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 60.8
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 60.8
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 60.8
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 4.0e-06 56.2 50 60.0
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 58.8
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 58.8
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.3e-06 55.8 56 55.4
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 6.9e-06 55.5 40 60.0
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 9.0e-06 55.1 45 68.9


User provided reference genes

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