Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.0e-73 280.0 149 100.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 8.6e-52 207.2 117 93.2
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.4e-38 163.3 121 71.9
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 2.7e-37 159.1 120 70.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 4.6e-37 158.3 125 67.2
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 6.0e-37 157.9 120 70.0
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.0e-36 157.1 120 70.0
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.0e-36 157.1 120 70.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.3e-36 156.8 120 70.8
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.7e-36 156.4 150 57.3
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.3e-36 156.0 120 70.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.9e-36 155.2 120 71.7
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.1e-36 154.8 120 69.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 5.1e-36 154.8 120 70.8
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 5.1e-36 154.8 121 71.1
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 6.6e-36 154.5 120 70.0
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 8.6e-36 154.1 120 70.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 8.6e-36 154.1 123 65.0
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 8.6e-36 154.1 120 68.3
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 8.6e-36 154.1 120 67.5
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 8.6e-36 154.1 120 69.2
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.6e-36 154.1 120 69.2
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.1e-35 153.7 124 66.1
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-35 153.7 120 69.2
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.5e-35 153.3 120 68.3
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.5e-35 153.3 120 69.2
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-35 153.3 120 68.3
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.9e-35 152.9 118 69.5
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.9e-35 152.9 118 69.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.9e-35 152.9 118 70.3
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.9e-35 152.9 120 70.8
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.5e-35 152.5 120 70.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 3.3e-35 152.1 120 68.3
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.3e-35 152.1 120 69.2
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 4.3e-35 151.8 120 70.0
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 7.3e-35 151.0 119 68.1
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 7.3e-35 151.0 120 66.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 7.3e-35 151.0 120 66.7
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 9.5e-35 150.6 120 69.2
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.5e-35 150.6 120 68.3
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 9.5e-35 150.6 120 66.7
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.2e-34 150.2 119 68.1
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.2e-34 150.2 120 65.8
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.2e-34 150.2 120 67.5
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.6e-34 149.8 120 66.7
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.6e-34 149.8 126 65.1
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.1e-34 149.4 120 68.3
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 2.1e-34 149.4 120 65.8
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.8e-34 149.1 120 66.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.6e-34 148.7 120 65.0
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.6e-34 148.7 120 66.7
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 3.6e-34 148.7 119 68.1
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 6.2e-34 147.9 119 64.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 6.2e-34 147.9 120 65.8
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 8.1e-34 147.5 120 68.3
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.4e-33 146.7 126 62.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.4e-33 146.7 125 63.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.8e-33 146.4 122 67.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.4e-33 146.0 123 64.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.4e-33 146.0 119 64.7
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.1e-33 145.6 123 63.4
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 3.1e-33 145.6 120 67.5
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 4.0e-33 145.2 119 65.5
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 4.0e-33 145.2 120 61.7
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 6.8e-33 144.4 123 63.4
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-32 143.3 123 61.8
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.0e-32 142.9 120 67.5
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.0e-32 142.9 118 62.7
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.0e-32 142.9 120 63.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.4e-32 142.1 116 65.5
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 4.4e-32 141.7 120 62.5
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.4e-32 141.7 121 65.3
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.4e-32 141.7 129 60.5
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.6e-32 141.0 118 62.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 9.9e-32 140.6 121 62.0
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 9.9e-32 140.6 128 59.4
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.3e-31 140.2 125 59.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-31 140.2 125 59.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-31 140.2 125 59.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.3e-31 140.2 125 59.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.3e-31 140.2 125 59.2
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.2e-31 139.4 120 60.8
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.9e-31 139.0 120 60.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 3.8e-31 138.7 120 64.2
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 4.9e-31 138.3 114 64.9
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.9e-31 138.3 120 60.8
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 6.4e-31 137.9 122 63.9
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 6.4e-31 137.9 111 66.7
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.4e-31 137.9 122 59.8
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.4e-31 137.5 122 59.8
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-30 137.1 125 57.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.1e-30 137.1 118 61.9
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.4e-30 136.0 120 60.8
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 5.4e-30 134.8 117 60.7
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 5.4e-30 134.8 119 61.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.2e-29 133.7 118 59.3
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.6e-29 133.3 109 67.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.1e-29 132.9 117 59.0
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.7e-29 132.5 118 58.5
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 3.5e-29 132.1 115 60.9
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 4.6e-29 131.7 118 62.7
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 4.6e-29 131.7 119 59.7
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 4.6e-29 131.7 117 65.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.3e-28 130.2 106 66.0
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-28 129.4 118 55.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-28 129.4 118 55.9
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.0e-28 129.0 120 58.3
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 3.0e-28 129.0 119 59.7
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.9e-28 128.6 120 57.5
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 3.9e-28 128.6 119 58.0
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 5.1e-28 128.3 101 70.3
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 6.6e-28 127.9 99 72.7
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.9e-27 126.3 118 55.1
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 4.3e-27 125.2 108 62.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.6e-27 124.8 99 68.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.6e-26 123.2 120 56.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.1e-25 120.6 104 62.5
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.1e-25 119.0 100 65.0
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 8.4e-23 110.9 96 64.6
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.2e-22 109.0 80 71.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 9.3e-22 107.5 99 58.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 9.3e-22 107.5 99 58.6
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-21 107.1 123 52.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-21 106.7 119 50.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.6e-21 106.7 117 46.2
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.6e-21 105.1 91 61.5
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.0e-21 104.8 99 60.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 6.0e-21 104.8 106 53.8
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.0e-20 102.4 104 55.8
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 6.6e-20 101.3 118 45.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.1e-19 100.5 87 65.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.5e-19 100.1 121 50.4
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.9e-19 99.8 108 52.8
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.9e-19 99.8 71 70.4
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 2.5e-19 99.4 100 57.0
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 5.6e-19 98.2 119 43.7
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 4.8e-18 95.1 119 43.7
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.4e-17 93.6 114 43.9
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.3e-17 91.7 118 43.2
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 6.9e-17 91.3 117 44.4
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 9.0e-17 90.9 117 47.0
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.5e-16 90.1 83 60.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 9.9e-16 87.4 116 41.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 9.9e-16 87.4 119 40.3
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-15 87.0 85 58.8
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 3.8e-15 85.5 123 47.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 4.9e-15 85.1 89 49.4
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.4e-15 84.3 118 44.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.1e-14 84.0 56 73.2
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.4e-14 83.6 121 40.5
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.4e-14 82.8 130 39.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.1e-14 81.3 103 43.7
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.0e-12 75.9 77 59.7
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 3.7e-10 68.9 61 60.7
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 2.4e-06 56.2 108 34.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 4.2e-06 55.5 62 40.3
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 9.3e-06 54.3 109 34.9
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 9.3e-06 54.3 115 33.0


User provided reference genes

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