Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 0.0e+00 1468.8 766 100.0
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 0.0e+00 1425.2 766 97.0
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 8.3e-276 953.7 795 64.5
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.4e-270 935.6 766 64.4
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.4e-269 931.8 791 62.7
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.6e-255 885.2 766 61.9
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 6.9e-254 880.9 780 60.5
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 9.0e-254 880.6 777 59.8
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.6e-253 879.0 766 60.6
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 6.4e-252 874.4 786 59.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 8.7e-249 864.0 768 59.2
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 9.6e-248 860.5 731 62.8
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.1e-246 857.1 769 60.3
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.8e-246 856.3 775 60.0
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.4e-246 855.9 769 60.7
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 5.3e-246 854.7 767 61.0
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 9.0e-246 854.0 774 57.5
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.2e-245 853.6 768 59.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.2e-245 853.6 815 57.4
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 3.4e-245 852.0 774 58.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 9.9e-245 850.5 768 59.5
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 2.2e-244 849.4 773 59.8
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 6.4e-244 847.8 766 59.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 6.7e-241 837.8 795 55.0
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.1e-239 832.8 767 59.5
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.8e-238 829.7 776 56.7
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.4e-238 829.3 761 58.6
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 2.4e-238 829.3 766 58.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 2.6e-237 825.9 768 57.3
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.3e-236 823.5 766 58.2
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.8e-236 822.0 771 56.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.2e-234 817.0 826 55.6
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.6e-234 816.6 752 58.5
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 2.7e-234 815.8 770 57.3
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 6.0e-234 814.7 767 56.5
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 7.9e-234 814.3 765 57.6
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 7.9e-234 814.3 766 57.2
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.3e-233 813.5 766 57.8
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.8e-233 813.1 776 56.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.3e-233 812.8 767 56.2
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.5e-232 810.1 797 56.6
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 2.5e-232 809.3 767 57.0
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.3e-232 808.9 761 57.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 7.4e-232 807.7 786 56.9
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.3e-231 807.0 783 57.3
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.8e-231 805.8 789 56.4
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.7e-231 805.4 771 56.2
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.6e-229 799.3 764 56.4
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 4.5e-229 798.5 796 55.2
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.2e-228 796.2 766 55.5
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.9e-228 795.8 762 54.6
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 6.5e-228 794.7 774 55.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.4e-227 793.5 766 55.7
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 5.5e-227 791.6 771 55.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 7.2e-227 791.2 756 55.3
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 3.6e-226 788.9 766 56.3
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.0e-225 787.3 774 54.5
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.3e-224 782.3 758 56.1
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 6.3e-223 778.1 767 53.8
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 4.1e-222 775.4 777 53.2
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.5e-221 773.5 748 54.9
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.5e-221 773.5 768 55.2
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.4e-221 772.3 753 54.4
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.9e-219 766.5 769 54.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.9e-219 766.5 780 53.5
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 3.2e-219 765.8 747 54.5
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 7.2e-219 764.6 710 58.0
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.4e-217 760.4 747 53.7
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 8.8e-217 757.7 785 53.2
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.7e-216 755.0 838 52.3
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.2e-215 753.1 748 53.6
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 8.2e-207 724.5 753 53.0
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.1e-206 724.2 703 55.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.0e-204 717.6 751 52.7
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.3e-204 717.2 755 50.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 2.2e-204 716.5 760 52.2
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.2e-204 716.5 780 49.9
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 4.2e-203 712.2 751 52.6
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.2e-202 710.7 750 52.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 3.6e-202 709.1 767 51.5
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.8e-201 706.8 758 51.6
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.3e-201 706.4 758 51.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.3e-201 706.4 767 51.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 8.8e-201 704.5 763 51.6
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 4.4e-200 702.2 753 51.9
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 8.5e-196 688.0 939 45.8
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 4.4e-192 675.6 763 50.5
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 4.7e-186 655.6 786 48.0
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 5.2e-185 652.1 771 48.6
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 5.7e-184 648.7 752 49.3
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.0e-177 627.9 829 42.1
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.4e-176 622.9 659 53.4
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.6e-173 614.0 434 69.1
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 3.0e-172 609.8 754 43.9
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.0e-172 609.8 624 53.7
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.1e-161 574.7 767 45.5
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.1e-161 574.7 767 45.5
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.1e-161 574.7 767 45.5
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.0e-160 570.5 731 47.1
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.0e-156 556.6 599 49.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 2.5e-155 553.5 753 41.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 3.4e-152 543.1 619 50.6
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 2.3e-148 530.4 718 44.2
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 4.0e-145 519.6 399 64.9
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 5.3e-145 519.2 554 51.6
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 7.6e-144 515.4 628 49.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 6.4e-143 512.3 518 56.8
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 8.7e-140 501.9 444 57.2
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.6e-128 463.8 560 50.5
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.4e-128 463.4 509 53.0
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 5.3e-121 439.5 574 45.8
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 7.7e-104 382.5 260 70.4
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.4e-89 335.1 531 42.9
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.5e-72 277.3 354 44.9
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 1.0e-71 275.8 194 64.4
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 9.2e-65 252.7 198 67.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 7.8e-64 249.6 173 72.3
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-49 201.8 142 67.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.4e-44 185.7 142 61.3
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.1e-41 176.0 142 57.7
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 3.2e-41 174.5 131 59.5
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.6e-40 172.2 130 60.8
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.7e-39 168.7 117 67.5
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.3e-38 164.5 114 70.2
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.9e-33 148.7 99 72.7
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-30 139.4 157 44.6
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 4.3e-30 137.5 207 38.2
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 2.6e-27 128.3 400 28.2
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.9e-26 124.0 84 71.4
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.6e-24 117.5 74 74.3
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.1e-21 108.6 482 22.6
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 3.6e-21 107.8 100 54.0
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.4e-20 105.1 85 58.8
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 5.3e-20 104.0 88 53.4
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 5.3e-20 104.0 88 53.4
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 6.9e-20 103.6 155 35.5
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.7e-16 91.7 403 24.3
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.8e-10 71.2 47 72.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-08 65.5 57 54.4
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 1.9e-06 58.9 54 55.6


User provided reference genes

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