Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3931 Papaver somniferum HOM05D006952 ORTHO05D008687 3.4e-61 238.0 113 100.0
PSO384G3323 Papaver somniferum HOM05D006952 ORTHO05D008687 1.0e-57 226.5 113 94.7
Cfa017257 Carpinus fangiana HOM05D006952 ORTHO05D008687 6.1e-50 200.7 113 76.1
Haze_20948 Corylus avellana HOM05D006952 ORTHO05D008687 6.1e-50 200.7 113 76.1
VMungo1383G2957 Vigna mungo HOM05D006952 ORTHO05D008687 2.3e-49 198.7 113 77.0
Nn2g11358 Nelumbo nucifera HOM05D006952 ORTHO05D008687 5.2e-49 197.6 113 76.1
Ciclev10013166m.g Citrus clementina HOM05D006952 ORTHO05D008687 6.7e-49 197.2 113 74.3
Thecc.05G022400 Theobroma cacao HOM05D006952 ORTHO05D008687 6.7e-49 197.2 113 76.1
arahy.Tifrunner.gnm1.ann1.ES8MJM Arachis hypogaea HOM05D006952 ORTHO05D008687 1.2e-48 196.4 113 74.3
Phvul.008G108100 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 2.0e-48 195.7 113 75.2
TAR636G2834 Trochodendron aralioides HOM05D006952 ORTHO05D008687 2.0e-48 195.7 113 76.1
Duzib128G2003 Durio zibethinus HOM05D006952 ORTHO05D008687 2.6e-48 195.3 113 75.2
Lalb_Chr03g0042961 Lupinus albus HOM05D006952 ORTHO05D008687 2.6e-48 195.3 113 74.3
Duzib093G2046 Durio zibethinus HOM05D006952 ORTHO05D008687 3.3e-48 194.9 113 75.2
CiPaw.10G154300 Carya illinoinensis HOM05D006952 ORTHO05D008687 4.4e-48 194.5 113 74.3
Atru.chr8.2194 Acer truncatum HOM05D006952 ORTHO05D008687 5.7e-48 194.1 113 73.5
arahy.Tifrunner.gnm1.ann1.EMW6YX Arachis hypogaea HOM05D006952 ORTHO05D008687 9.7e-48 193.4 112 73.2
Glyma.07G144600 Glycine max HOM05D006952 ORTHO05D008687 9.7e-48 193.4 113 74.3
TWI77G0025 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 1.3e-47 193.0 113 75.2
Aqoxy1G00719 Aquilegia oxysepala HOM05D006952 ORTHO05D008687 2.2e-47 192.2 111 73.9
Glyma.18G196300 Glycine max HOM05D006952 ORTHO05D008687 2.2e-47 192.2 113 74.3
Prupe.6G270600 Prunus persica HOM05D006952 ORTHO05D008687 2.2e-47 192.2 113 73.5
Gohir.D09G158700 Gossypium hirsutum HOM05D006952 ORTHO05D008687 3.7e-47 191.4 113 73.5
Gorai.006G180400 Gossypium raimondii HOM05D006952 ORTHO05D008687 3.7e-47 191.4 113 73.5
Cc06_g01680 Coffea canephora HOM05D006952 ORTHO05D008687 4.8e-47 191.0 113 72.6
Hma1.2p1_0763F.1_g214620 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 6.3e-47 190.7 113 70.8
CsaV3_3G034170 Cucumis sativus L. HOM05D006952 ORTHO05D008687 8.2e-47 190.3 113 73.5
CANSAT35G1060 Cannabis sativa HOM05D006952 ORTHO05D008687 1.4e-46 189.5 113 73.5
TAR369G0842 Trochodendron aralioides HOM05D006952 ORTHO05D008687 1.4e-46 189.5 113 75.2
CiPaw.09G205900 Carya illinoinensis HOM05D006952 ORTHO05D008687 2.4e-46 188.7 113 73.5
MSTRG.5599 Avicennia marina HOM05D006952 ORTHO05D008687 3.1e-46 188.3 113 69.0
Cpa.g.sc56.113 Carica papaya HOM05D006952 ORTHO05D008687 3.1e-46 188.3 113 71.7
ATR0618G178 Amborella trichopoda HOM05D006952 ORTHO05D008687 4.1e-46 188.0 113 70.8
MSTRG.19031 Avicennia marina HOM05D006952 ORTHO05D008687 4.1e-46 188.0 113 72.6
Medtr7g066800 Medicago truncatula HOM05D006952 ORTHO05D008687 4.1e-46 188.0 113 71.7
TPR.G1575 Trifolium pratense HOM05D006952 ORTHO05D008687 4.1e-46 188.0 113 71.7
MBI14_g32939_MAGBIO Magnolia biondii HOM05D006952 ORTHO05D008687 5.3e-46 187.6 113 73.5
Phvul.010G008400 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 7.0e-46 187.2 113 73.5
PGR031G1789 Punica granatum HOM05D006952 ORTHO05D008687 7.0e-46 187.2 113 71.7
RcHm_v2.0_Chr3g0463891 Rosa chinensis HOM05D006952 ORTHO05D008687 7.0e-46 187.2 108 75.0
Migut.J00227 Erythranthe guttata HOM05D006952 ORTHO05D008687 1.2e-45 186.4 113 69.0
Gohir.A09G163200 Gossypium hirsutum HOM05D006952 ORTHO05D008687 1.2e-45 186.4 113 72.6
MELO3C009193.2 Cucumis melo HOM05D006952 ORTHO05D008687 1.6e-45 186.0 113 71.7
Nn2g13603 Nelumbo nucifera HOM05D006952 ORTHO05D008687 2.0e-45 185.7 110 71.8
Psat0s1978g0040 Pisum sativum HOM05D006952 ORTHO05D008687 2.0e-45 185.7 113 69.0
PGSC0003DMG400020322 Solanum tuberosum HOM05D006952 ORTHO05D008687 4.5e-45 184.5 113 69.9
Glyma.03G077100 Glycine max HOM05D006952 ORTHO05D008687 5.9e-45 184.1 113 72.6
Sed0014444 Sechium edule HOM05D006952 ORTHO05D008687 5.9e-45 184.1 113 71.7
SalBow5G3631 Salvia bowleyana HOM05D006952 ORTHO05D008687 7.7e-45 183.7 113 71.7
CAN.G355.18 Capsicum annuum HOM05D006952 ORTHO05D008687 1.0e-44 183.3 113 69.9
Manes.08G087500 Manihot esculenta HOM05D006952 ORTHO05D008687 1.0e-44 183.3 113 72.6
Sopen09g007000 Solanum pennellii HOM05D006952 ORTHO05D008687 1.0e-44 183.3 113 69.9
TWI74G1053 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 5.0e-44 181.0 113 72.6
Glyma.01G111500 Glycine max HOM05D006952 ORTHO05D008687 8.5e-44 180.3 113 71.7
Duzib106G1795 Durio zibethinus HOM05D006952 ORTHO05D008687 1.5e-43 179.5 113 69.9
Oeu015014.1 Olea europaea HOM05D006952 ORTHO05D008687 2.5e-43 178.7 113 68.1
Eucgr.B02782 Eucalyptus grandis HOM05D006952 ORTHO05D008687 3.2e-43 178.3 113 68.1
FAN09G1020 Fragaria x ananassa HOM05D006952 ORTHO05D008687 4.2e-43 177.9 107 72.0
Lalb_Chr19g0124771 Lupinus albus HOM05D006952 ORTHO05D008687 4.2e-43 177.9 113 67.3
Oeu030529.1 Olea europaea HOM05D006952 ORTHO05D008687 4.2e-43 177.9 110 69.1
DCAR_024036 Daucus carota HOM05D006952 ORTHO05D008687 5.5e-43 177.6 113 65.5
DCAR_024037 Daucus carota HOM05D006952 ORTHO05D008687 5.5e-43 177.6 113 65.5
Potri.004G103400 Populus trichocarpa HOM05D006952 ORTHO05D008687 5.5e-43 177.6 113 69.9
Potri.006G096200 Populus trichocarpa HOM05D006952 ORTHO05D008687 1.2e-42 176.4 113 68.1
Pp3c15_15480 Physcomitrium patens HOM05D006952 ORTHO05D008687 4.7e-42 174.5 111 67.6
Potri.016G110900 Populus trichocarpa HOM05D006952 ORTHO05D008687 4.7e-42 174.5 113 68.1
Manes.09G102000 Manihot esculenta HOM05D006952 ORTHO05D008687 8.0e-42 173.7 113 69.0
Lj3g0025387 Lotus japonicus HOM05D006952 ORTHO05D008687 1.0e-41 173.3 113 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2345 Anthoceros agrestis HOM05D001533 ORTHO05D003743 1.8e-41 172.6 110 66.4
Actinidia05346 Actinidia chinensis HOM05D006952 ORTHO05D008687 3.0e-41 171.8 103 69.9
Solyc09g013140.3 Solanum lycopersicum HOM05D006952 ORTHO05D008687 4.0e-41 171.4 108 68.5
Sed0025859 Sechium edule HOM05D006952 ORTHO05D008687 6.8e-41 170.6 109 68.8
SMO116G0119 Selaginella moellendorffii HOM05D006952 ORTHO05D008687 6.8e-41 170.6 113 66.4
Hma1.2p1_0244F.1_g101210 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 1.2e-40 169.9 108 65.7
MD04G1146800 Malus domestica HOM05D006952 ORTHO05D008687 2.6e-40 168.7 108 66.7
THA.LOC104816220 Tarenaya hassleriana HOM05D006952 ORTHO05D008687 2.6e-40 168.7 108 66.7
Pp3c9_14060 Physcomitrium patens HOM05D006952 ORTHO05D008687 4.4e-40 167.9 110 64.5
Carub.0003s0825 Capsella rubella HOM05D006952 ORTHO05D008687 1.7e-39 166.0 111 64.0
HanXRQChr13g0406321 Helianthus annuus HOM05D006952 ORTHO05D008687 8.3e-39 163.7 112 65.2
Ah.15g089870 Amaranthus hybridus HOM05D006952 ORTHO05D008687 1.1e-38 163.3 113 65.5
AL3G20160 Arabidopsis lyrata HOM05D006952 ORTHO05D008687 1.4e-38 162.9 111 62.2
BcaC09g48008 Brassica carinata HOM05D006952 ORTHO05D008687 2.4e-38 162.2 110 64.5
CARHR083460 Cardamine hirsuta HOM05D006952 ORTHO05D008687 2.4e-38 162.2 111 64.0
HPP92_012624 Vanilla planifolia HOM05D006952 ORTHO05D008687 2.4e-38 162.2 108 68.5
AT3G09085 Arabidopsis thaliana HOM05D006952 ORTHO05D008687 1.2e-37 159.8 111 62.2
Sp3g07540 Schrenkiella parvula HOM05D006952 ORTHO05D008687 1.6e-37 159.5 111 61.3
BraA01t04315Z Brassica rapa HOM05D006952 ORTHO05D008687 2.0e-37 159.1 110 63.6
Thhalv10021991m.g Eutrema salsugineum HOM05D006952 ORTHO05D008687 3.5e-37 158.3 111 61.3
BolC1t05474H Brassica oleracea HOM05D006952 ORTHO05D008687 7.7e-37 157.1 110 62.7
BcaC09g48053 Brassica carinata HOM05D006952 ORTHO05D008687 1.3e-36 156.4 110 62.7
HanXRQChr13g0406361 Helianthus annuus HOM05D006952 ORTHO05D008687 5.0e-36 154.5 103 63.1
HanXRQChr13g0406351 Helianthus annuus HOM05D006952 ORTHO05D008687 8.5e-36 153.7 104 62.5
Lsat_1_v5_gn_5_155300 Lactuca sativa HOM05D006952 ORTHO05D008687 1.5e-35 152.9 102 61.8
TPR.G5256 Trifolium pratense HOM05D006952 ORTHO05D008687 4.2e-35 151.4 113 57.5
TPR.G6676 Trifolium pratense HOM05D006952 ORTHO05D008687 5.5e-35 151.0 113 57.5
DCAR_008639 Daucus carota HOM05D006952 ORTHO05D008687 7.2e-35 150.6 113 58.4
Rhsim04G0165900 Rhododendron simsii HOM05D006952 ORTHO05D008687 1.6e-34 149.4 105 61.0
Lsat_1_v5_gn_5_155361 Lactuca sativa HOM05D006952 ORTHO05D008687 4.7e-34 147.9 108 61.1
Medtr4g014970 Medicago truncatula HOM05D006952 ORTHO05D008687 8.8e-33 143.7 110 55.5
HanXRQChr13g0406341 Helianthus annuus HOM05D006952 ORTHO05D008687 2.2e-31 139.0 111 54.1
Cc02_g31680 Coffea canephora HOM05D006952 ORTHO05D008687 5.4e-30 134.4 100 63.0
Zm00001eb011810 Zea mays HOM05D006952 ORTHO05D008687 1.0e-28 130.2 109 54.1
CSS0036371 Camellia sinensis var. sinensis HOM05D006952 ORTHO05D008687 2.3e-28 129.0 105 56.2
Os03g0265800 Oryza sativa ssp. japonica HOM05D006952 ORTHO05D008687 3.8e-28 128.3 104 55.8
Cc07_g20110 Coffea canephora HOM05D006952 ORTHO05D008687 8.6e-28 127.1 115 57.4
SEGI_04409 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 4.3e-27 124.8 113 53.1
Sabra06G0073900 Salix brachista HOM05D006952 ORTHO05D008687 1.0e-25 120.2 113 53.1
Mapoly0072s0073 Marchantia polymorpha HOM05D006952 ORTHO05D008687 1.5e-24 116.3 107 48.6
Nitab4.5_0011723g0010 Nicotiana tabacum HOM05D006952 ORTHO05D008687 1.3e-23 113.2 107 50.5
Psat0s1978g0160 Pisum sativum HOM05D006607 ORTHO05D008166 1.2e-21 106.7 94 53.2
GSVIVG01034013001 Vitis vinifera HOM05D006952 ORTHO05D008687 2.7e-21 105.5 52 90.4
Cre03.g188900 Chlamydomonas reinhardtii HOM05D006952 ORTHO05D008687 1.7e-12 76.3 94 41.5
SEGI_08039 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 1.4e-09 66.6 74 44.6
TAR731G0001 Trochodendron aralioides HOM05D000320 ORTHO05D000532 5.2e-09 64.7 34 82.4
RcHm_v2.0_Chr4g0412041 Rosa chinensis HOM05D006952 ORTHO05D008687 1.2e-08 63.5 41 68.3


User provided reference genes

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