Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 7.1e-139 497.3 256 100.0
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 5.3e-102 374.8 202 96.5
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.9e-59 233.4 201 60.7
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 8.4e-55 218.0 202 54.5
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 3.2e-54 216.1 198 55.1
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 9.2e-54 214.5 200 55.5
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.3e-52 210.7 200 54.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.9e-51 206.8 201 52.2
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 2.1e-50 203.4 200 51.0
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.4e-49 200.7 200 53.0
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.8e-49 200.3 200 51.5
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 3.1e-49 199.5 201 48.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.0e-49 199.1 201 50.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 6.9e-49 198.4 200 51.5
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 9.9e-48 194.5 202 51.5
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.7e-47 193.7 200 51.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 3.8e-47 192.6 201 47.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 3.8e-47 192.6 203 50.7
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 6.4e-47 191.8 201 49.3
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.4e-46 189.9 201 47.8
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.2e-46 189.1 201 49.3
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 7.1e-46 188.3 201 46.8
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.6e-45 187.2 200 46.5
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.7e-45 186.4 202 48.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.7e-45 186.4 202 49.0
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.0e-45 185.3 201 47.8
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.0e-44 184.5 202 46.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.0e-44 183.0 199 47.2
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 3.9e-44 182.6 203 48.3
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 2.5e-43 179.9 201 46.3
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.6e-43 178.7 199 45.7
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 5.6e-43 178.7 203 46.3
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.1e-42 176.8 201 46.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.6e-42 176.0 199 45.2
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.6e-42 176.0 201 49.8
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.8e-42 175.6 199 45.2
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.8e-42 175.6 199 45.2
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 6.9e-41 171.8 199 45.7
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 9.0e-41 171.4 199 46.7
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-40 170.6 199 44.7
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.2e-39 166.8 200 46.5
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.2e-39 166.8 201 45.8
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 4.9e-39 165.6 190 45.3
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.1e-38 164.5 202 43.1
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.9e-38 163.7 202 41.1
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.4e-38 162.2 200 40.5
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.4e-38 162.2 200 42.0
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 7.1e-38 161.8 203 46.3
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 7.9e-37 158.3 200 40.0
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 3.9e-36 156.0 203 42.4
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 6.7e-36 155.2 217 42.9
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.1e-35 154.5 200 40.5
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 2.5e-35 153.3 194 42.8
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 5.6e-35 152.1 195 44.1
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.1e-34 150.2 202 39.6
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.8e-34 149.8 187 40.6
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 1.9e-30 137.1 283 32.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.2e-30 136.3 200 36.5
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 4.6e-29 132.5 193 42.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 7.9e-29 131.7 185 37.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 1.3e-28 131.0 201 34.8
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 5.1e-28 129.0 199 39.2
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.5e-27 127.5 202 39.1
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.9e-27 127.1 200 37.5
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.3e-27 125.9 200 36.5
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 4.3e-27 125.9 197 36.5
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 7.4e-27 125.2 195 41.5
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 7.4e-27 125.2 200 34.5
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 6.2e-26 122.1 200 32.5
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 6.2e-26 122.1 200 32.5
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.4e-25 120.2 160 41.9
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 5.3e-25 119.0 67 91.0
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 2.0e-24 117.1 200 31.5
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.7e-23 114.0 148 40.5
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 8.4e-23 111.7 202 33.7
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 3.2e-22 109.8 107 49.5
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.5e-22 109.0 108 55.6
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 9.3e-22 108.2 107 51.4
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.6e-21 107.5 101 51.5
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 7.9e-21 105.1 92 53.3
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 5.1e-20 102.4 107 47.7
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 8.7e-20 101.7 107 48.6
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.1e-19 101.3 107 49.5
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.5e-19 100.9 157 38.9
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.3e-18 97.8 113 46.9
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-18 97.8 107 47.7
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-18 97.4 185 35.7
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.2e-18 97.1 87 54.0
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 2.8e-18 96.7 107 49.5
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 3.7e-18 96.3 107 48.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.7e-18 96.3 87 52.9
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.3e-18 95.5 107 46.7
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 8.2e-18 95.1 163 33.1
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.2e-18 95.1 107 46.7
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.1e-17 92.8 95 51.6
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.1e-17 92.8 107 47.7
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.5e-16 90.9 107 46.7
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.6e-16 90.1 74 58.1
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.6e-16 90.1 107 46.7
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 3.4e-16 89.7 101 47.5
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 5.9e-16 89.0 107 41.1
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.3e-15 87.8 107 43.0
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.2e-15 87.0 107 43.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.2e-15 87.0 107 43.0
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 8.5e-15 85.1 107 42.1
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.4e-14 84.3 197 27.9
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.9e-14 84.0 182 31.9
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.5e-14 83.6 107 41.1
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.2e-14 83.2 125 42.4
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 7.2e-14 82.0 107 43.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.1e-13 80.5 105 40.0
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.7e-13 80.1 84 44.0
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 3.6e-13 79.7 91 42.9
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 4.6e-13 79.3 87 47.1
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 6.1e-13 79.0 107 38.3
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 7.9e-13 78.6 60 63.3
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.0e-12 78.2 84 42.9
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.0e-12 78.2 87 47.1
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.4e-12 77.8 61 57.4
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 2.3e-12 77.0 71 50.7
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 3.0e-12 76.6 165 30.9
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 3.0e-12 76.6 59 61.0
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.1e-11 74.7 63 58.7
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.5e-11 74.3 58 56.9
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.5e-11 73.6 100 41.0
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.3e-11 73.2 100 40.0
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.3e-11 72.8 100 40.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 9.7e-11 71.6 107 40.2
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 9.7e-11 71.6 63 54.0
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 2.8e-10 70.1 107 39.3
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.8e-09 67.4 128 30.5
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.8e-09 67.4 128 30.5
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 1.8e-09 67.4 61 49.2
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.4e-09 67.0 58 55.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.4e-09 67.0 59 50.8
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 3.1e-09 66.6 59 59.3
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.5e-08 64.3 108 33.3
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 5.9e-08 62.4 109 35.8
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.0e-07 61.6 71 46.5
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.9e-06 57.4 107 35.5
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 4.2e-06 56.2 108 34.3
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 4.2e-06 56.2 99 34.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 7.2e-06 55.5 53 50.9
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 7.2e-06 55.5 53 50.9


User provided reference genes

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