Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 0.0e+00 3465.6 1759 100.0
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 0.0e+00 3254.5 1767 95.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1159.8 1859 41.7
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 0.0e+00 1111.3 1698 42.9
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 0.0e+00 1098.2 1834 39.5
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.5e-307 1059.7 1804 40.4
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 1.7e-300 1036.9 1828 38.9
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.5e-291 1007.3 1840 37.7
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 6.3e-287 991.9 1840 38.1
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.8e-286 990.3 1837 38.2
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 2.6e-280 969.9 1730 38.3
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 4.1e-278 962.6 1731 38.1
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 3.3e-275 953.0 1852 36.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 3.3e-267 926.4 1838 36.5
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 8.1e-266 921.8 1762 37.2
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 8.9e-265 918.3 1791 36.6
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 9.2e-262 908.3 1814 35.5
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 9.5e-259 898.3 1634 38.2
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 3.4e-256 889.8 1827 34.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 4.9e-255 885.9 1833 35.7
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 8.4e-255 885.2 1819 35.7
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 6.0e-253 879.0 1835 35.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.5e-251 874.4 1893 35.3
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 1.6e-250 870.9 1782 36.0
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 6.2e-250 869.0 1843 35.9
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.6e-240 835.5 1852 34.8
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.3e-236 824.7 1768 35.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-235 820.8 1841 34.5
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.5e-235 820.5 1426 38.1
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 4.3e-235 819.7 2130 31.7
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 3.7e-234 816.6 1275 39.5
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 8.1e-234 815.5 1811 34.2
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 4.5e-232 809.7 1831 34.6
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.8e-232 809.3 1831 34.3
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 1.3e-231 808.1 1838 34.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.7e-231 807.7 1839 34.7
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 2.2e-231 807.4 1841 34.4
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.1e-227 795.0 1818 33.2
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.5e-224 784.6 1864 32.9
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 2.2e-223 780.8 1824 33.4
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 2.2e-223 780.8 1817 33.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 2.5e-222 777.3 1762 34.6
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 2.1e-221 774.2 1773 34.3
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.3e-220 771.5 1253 37.8
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 1.1e-219 768.5 1829 33.3
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 4.1e-217 760.0 1758 33.7
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.0e-215 755.4 1745 33.2
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.9e-215 753.8 1758 33.1
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.9e-215 753.8 1758 33.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 2.5e-214 750.7 1838 32.6
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 3.2e-214 750.4 1707 32.9
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.5e-211 741.5 1851 30.9
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 3.3e-211 740.3 1863 32.6
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 8.2e-210 735.7 1784 31.9
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 8.2e-210 735.7 1817 31.9
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.8e-209 734.6 1702 32.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 4.1e-209 733.4 1828 31.9
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.2e-208 731.9 1839 32.1
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 2.9e-207 727.2 1791 31.9
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.9e-204 716.8 1673 31.9
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.4e-201 708.4 1256 35.9
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 7.0e-201 706.1 1260 36.0
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.5e-200 703.7 1791 32.5
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 9.4e-198 695.7 1263 35.8
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 3.0e-196 690.6 1760 32.2
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 6.7e-196 689.5 1834 31.1
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 8.8e-196 689.1 673 53.6
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.3e-195 687.2 1714 31.0
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 4.4e-195 686.8 1302 34.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.1e-193 680.6 1880 31.6
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 5.7e-187 659.8 1814 30.5
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 3.7e-186 657.1 1697 32.6
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 6.3e-186 656.4 1781 31.0
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 8.5e-183 646.0 1232 36.6
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 8.3e-178 629.4 836 41.3
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.1e-177 627.5 1341 34.2
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 4.2e-174 617.1 807 42.4
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 8.0e-173 612.8 1698 30.8
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.0e-171 608.2 1693 31.2
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 4.4e-171 607.1 1336 34.4
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 2.2e-170 604.7 1246 35.1
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 2.0e-168 598.2 1698 31.1
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.7e-168 597.8 1467 33.9
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 8.6e-167 592.8 1663 31.0
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 4.3e-166 590.5 1542 31.9
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.2e-165 589.0 1685 30.9
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 3.6e-165 587.4 1673 30.8
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 1.0e-164 585.9 1675 31.0
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.2e-163 582.4 1701 30.2
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 9.2e-161 572.8 663 45.2
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 8.1e-157 559.7 645 46.2
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 9.9e-147 526.2 770 38.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 2.9e-146 524.6 1755 29.4
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 6.6e-143 513.5 1804 27.9
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 4.2e-129 467.6 906 33.4
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.5e-115 422.5 1402 29.4
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 7.6e-107 393.7 637 38.5
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.6e-99 368.6 840 36.1
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.7e-94 350.1 435 41.1
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 3.0e-79 302.0 891 28.8
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 8.8e-79 300.4 652 33.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 2.0e-78 299.3 454 35.9
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.7e-72 278.9 1175 28.8
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.3e-71 275.8 842 29.1
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.4e-68 266.5 964 28.6
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 4.1e-68 265.0 545 31.9
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.7e-66 259.6 1170 26.2
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 8.3e-61 240.7 1040 27.2
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 4.6e-51 208.4 650 27.1
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 2.9e-45 189.1 541 29.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 4.3e-41 175.3 782 27.2
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.3e-25 122.5 674 28.5
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 4.4e-22 112.1 158 32.3
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.4e-20 106.3 129 38.0
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.6e-16 93.6 341 28.2
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 4.5e-14 85.5 341 28.7
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 7.6e-14 84.7 418 27.5
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.3e-13 84.0 90 47.8
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 8.4e-13 81.3 393 27.5
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.1e-12 80.9 350 30.3
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.3e-10 73.9 59 64.4
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 8.7e-10 71.2 235 33.2
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 3.3e-09 69.3 117 35.0
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 9.6e-09 67.8 261 26.1
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 2.4e-07 63.2 296 27.7


User provided reference genes

Program Settings