Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.8e-232 808.9 422 100.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.8e-227 792.3 422 95.3
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 5.3e-224 780.8 421 92.2
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.9e-173 612.8 416 69.7
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.2e-172 610.1 418 70.1
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.4e-171 605.9 420 69.5
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.4e-168 596.7 334 88.3
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.1e-166 588.2 419 71.1
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 4.0e-163 578.6 421 67.5
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 5.2e-163 578.2 418 66.3
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 6.9e-163 577.8 418 69.1
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 9.0e-163 577.4 418 66.0
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.5e-162 576.6 418 66.5
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 4.4e-162 575.1 418 70.8
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 5.8e-162 574.7 420 65.5
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 5.8e-162 574.7 417 70.3
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 9.9e-162 573.9 418 66.0
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.7e-161 573.2 418 66.3
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.9e-161 571.6 419 66.8
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.1e-160 570.5 418 65.6
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.4e-160 569.3 423 68.6
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.2e-159 567.0 418 65.1
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.1e-159 566.2 420 70.2
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 2.7e-159 565.8 424 64.6
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 2.7e-159 565.8 418 65.3
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 3.5e-159 565.5 418 63.9
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.0e-158 563.9 418 64.8
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 3.0e-158 562.4 420 68.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 3.9e-158 562.0 418 63.9
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 5.1e-158 561.6 421 71.3
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 5.1e-158 561.6 423 64.1
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 6.6e-158 561.2 419 67.1
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 2.5e-157 559.3 418 65.8
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.5e-157 559.3 418 64.4
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 4.3e-157 558.5 419 66.8
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.6e-156 556.6 429 63.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.1e-156 556.2 416 68.3
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.1e-156 556.2 416 68.8
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 2.1e-156 556.2 425 63.1
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.8e-155 553.1 422 64.9
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.1e-155 552.4 417 64.0
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 3.1e-155 552.4 419 64.4
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 4.0e-155 552.0 428 62.1
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 5.3e-155 551.6 418 64.1
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.5e-154 550.1 415 63.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 3.4e-154 548.9 429 62.2
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 5.8e-154 548.1 418 64.1
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 9.9e-154 547.4 429 62.0
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 9.9e-154 547.4 418 62.9
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 2.2e-153 546.2 418 62.7
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 4.9e-153 545.0 418 62.4
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.9e-153 545.0 415 62.2
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 4.9e-153 545.0 428 67.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 8.4e-153 544.3 415 62.7
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.1e-152 543.9 418 62.9
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 4.2e-152 542.0 415 61.9
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 7.1e-152 541.2 415 61.9
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 9.3e-152 540.8 419 63.2
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.6e-151 540.0 424 67.5
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.1e-151 539.7 415 61.7
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 6.0e-151 538.1 381 67.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 7.9e-151 537.7 415 60.7
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 2.3e-150 536.2 446 63.2
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.3e-150 536.2 415 61.0
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 3.0e-150 535.8 419 62.1
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.7e-150 534.6 452 59.5
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.3e-149 531.9 400 61.5
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 5.6e-149 531.6 415 61.0
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 7.4e-149 531.2 416 61.5
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.7e-148 528.9 329 72.6
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.8e-147 526.6 423 61.0
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.8e-147 526.6 419 64.4
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 4.0e-147 525.4 418 62.2
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 4.0e-147 525.4 423 61.0
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 6.9e-147 524.6 483 60.7
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.0e-146 523.1 437 64.1
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.4e-146 522.3 429 65.3
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 9.9e-146 520.8 415 62.2
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.3e-145 520.4 379 68.3
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.9e-144 516.5 418 62.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.2e-144 515.4 415 63.4
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-143 513.8 415 63.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.6e-143 513.5 415 63.4
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 2.1e-143 513.1 416 60.8
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.5e-141 506.9 387 63.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.3e-141 505.8 384 62.5
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 2.1e-140 503.1 475 54.9
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 3.7e-140 502.3 418 60.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.0e-139 498.8 324 72.2
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-138 496.5 455 56.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 6.0e-135 485.0 442 56.3
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.5e-133 480.3 384 61.7
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 6.3e-132 474.9 304 70.1
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.5e-130 468.8 426 57.3
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 3.6e-127 459.1 415 61.4
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 3.0e-126 456.1 407 54.5
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 6.7e-126 454.9 299 67.9
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.3e-125 452.2 319 65.5
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 5.7e-125 451.8 417 55.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.2e-124 448.0 302 68.5
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.1e-123 447.6 329 62.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 6.5e-121 438.3 419 50.6
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.1e-120 437.6 304 68.8
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-118 430.3 328 62.8
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 9.7e-117 424.5 423 50.4
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 2.4e-115 419.9 418 52.6
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 8.0e-111 404.8 419 49.4
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 6.7e-110 401.7 429 55.0
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.2e-100 368.2 316 56.3
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.7e-98 363.2 316 57.3
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-93 347.4 296 57.1
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.4e-91 339.0 273 61.5
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.4e-78 297.7 183 68.9
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 7.5e-77 292.0 272 64.3
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 8.3e-68 261.9 453 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 2.4e-67 260.4 218 53.7
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.6e-61 240.4 373 39.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 8.1e-55 218.8 562 29.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.4e-51 207.2 442 34.2
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.6e-47 194.5 251 44.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.1e-43 181.8 201 48.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.9e-43 181.0 115 72.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.7e-36 157.9 129 59.7
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 8.4e-36 155.6 121 62.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 7.4e-32 142.5 117 56.4
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.0e-25 122.1 256 35.9
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.3e-24 116.7 134 48.5
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.4e-20 102.4 116 50.0
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 3.0e-17 94.0 118 40.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.5e-13 81.6 60 65.0
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.2e-10 72.0 62 59.7
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 5.7e-08 63.2 98 39.8
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 9.1e-06 55.8 39 59.0


User provided reference genes

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