Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 9.5e-75 283.5 150 100.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 6.6e-60 234.2 145 89.0
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 7.3e-59 230.7 145 87.6
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.7e-47 193.0 143 72.0
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.1e-46 190.3 143 74.1
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.4e-46 189.9 143 74.1
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 5.4e-46 188.0 143 72.0
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.6e-45 186.4 143 69.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.6e-45 184.9 143 71.3
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.0e-44 183.7 143 69.9
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.0e-44 183.7 143 69.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.7e-44 183.0 145 70.3
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.7e-44 183.0 143 69.9
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.0e-44 182.2 143 69.2
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.0e-44 182.2 143 69.2
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 6.6e-44 181.0 143 67.8
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.1e-43 180.3 151 66.9
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.1e-43 180.3 141 70.2
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.9e-43 179.5 143 69.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.5e-43 179.1 143 72.0
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.5e-43 179.1 140 70.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.3e-43 178.7 154 66.9
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.3e-43 178.7 154 66.9
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 3.3e-43 178.7 143 67.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 3.3e-43 178.7 141 70.2
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 3.3e-43 178.7 146 66.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 4.3e-43 178.3 143 68.5
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 4.3e-43 178.3 143 67.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.6e-43 177.9 148 65.5
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 5.6e-43 177.9 143 67.8
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 7.3e-43 177.6 141 70.2
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 7.3e-43 177.6 150 67.3
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.3e-42 176.8 144 68.8
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.6e-42 176.4 143 66.4
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.8e-42 175.6 141 68.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 2.8e-42 175.6 149 61.1
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.6e-42 175.3 141 70.2
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 3.6e-42 175.3 141 68.1
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 4.8e-42 174.9 141 68.1
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 6.2e-42 174.5 143 66.4
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 6.2e-42 174.5 143 65.0
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 8.1e-42 174.1 143 65.7
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 8.1e-42 174.1 143 65.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 8.1e-42 174.1 141 68.1
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.4e-41 173.3 151 66.9
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.4e-41 173.3 144 66.0
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.4e-41 173.3 145 66.2
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.0e-41 171.8 143 65.7
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.3e-41 171.4 150 65.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.3e-41 171.4 150 65.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 9.0e-41 170.6 143 65.0
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 9.0e-41 170.6 141 66.7
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 9.0e-41 170.6 152 62.5
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.2e-40 170.2 148 64.9
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.0e-40 169.5 143 65.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.6e-40 169.1 143 65.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.6e-40 169.1 143 65.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.4e-40 168.7 150 62.0
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 3.4e-40 168.7 141 66.7
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.5e-40 168.3 143 65.7
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.8e-40 167.9 143 64.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.8e-40 167.9 141 65.2
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 5.8e-40 167.9 154 63.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 7.6e-40 167.5 143 65.0
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.6e-40 167.5 149 62.4
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.3e-39 166.8 141 66.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.7e-39 166.4 143 64.3
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.2e-39 166.0 144 66.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.2e-39 166.0 142 64.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 2.9e-39 165.6 145 64.8
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 2.9e-39 165.6 151 62.9
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.9e-39 165.6 151 62.3
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.9e-39 165.6 144 63.9
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.9e-39 165.6 154 63.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.8e-39 165.2 151 62.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.8e-39 165.2 151 62.9
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.8e-39 165.2 151 62.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 4.9e-39 164.9 144 64.6
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.9e-39 164.9 151 62.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 6.4e-39 164.5 144 65.3
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 6.4e-39 164.5 143 65.0
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 8.4e-39 164.1 144 65.3
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 8.4e-39 164.1 144 64.6
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.4e-39 164.1 143 63.6
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 8.4e-39 164.1 147 61.9
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.1e-38 163.7 144 63.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.1e-38 163.7 143 63.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.1e-38 163.7 150 62.7
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.4e-38 163.3 143 63.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.9e-38 162.9 144 63.9
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.9e-38 162.9 144 64.6
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.9e-38 162.9 144 63.9
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.9e-38 162.9 151 62.3
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.4e-38 162.5 144 63.9
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 3.2e-38 162.2 151 62.3
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.2e-38 162.2 144 63.9
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.2e-38 162.2 151 61.6
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.2e-38 162.2 140 63.6
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.2e-38 161.8 143 64.3
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 4.2e-38 161.8 151 60.9
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.2e-38 161.8 130 70.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.1e-38 161.0 141 67.4
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 9.3e-38 160.6 141 64.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 9.3e-38 160.6 143 63.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 9.3e-38 160.6 151 60.3
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.2e-37 160.2 144 61.8
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.2e-37 160.2 151 60.9
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.1e-37 159.5 151 60.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.5e-37 158.7 149 61.7
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 4.6e-37 158.3 140 65.0
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.6e-37 158.3 149 61.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 6.0e-37 157.9 140 65.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 6.0e-37 157.9 151 59.6
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.3e-36 156.8 149 60.4
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.3e-36 156.8 144 63.9
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-34 150.2 133 63.2
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 4.8e-34 148.3 141 61.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 4.0e-33 145.2 144 59.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 5.8e-32 141.4 143 59.4
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.2e-31 139.4 134 61.9
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 2.2e-31 139.4 154 55.2
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.2e-31 139.4 154 55.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 8.4e-31 137.5 150 54.7
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 7.1e-30 134.4 148 54.7
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.5e-29 132.1 183 48.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 6.7e-28 127.9 144 56.9
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 8.7e-28 127.5 128 61.7
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 4.0e-25 118.6 115 58.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.0e-24 116.3 139 54.0
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 4.9e-23 111.7 143 46.2
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 7.9e-21 104.4 118 55.9
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.1e-20 101.7 98 54.1
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.5e-19 100.1 141 42.6
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 9.7e-19 97.4 77 74.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.6e-18 96.7 87 66.7
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.2e-18 96.3 76 73.7
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 3.7e-18 95.5 143 46.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 6.3e-18 94.7 78 71.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 6.9e-17 91.3 64 81.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.0e-15 87.4 70 70.0
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.8e-10 68.6 48 79.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-09 67.4 84 45.2
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.6e-08 62.8 74 56.8
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.1e-06 57.4 142 33.1


User provided reference genes

Program Settings