Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 0.0e+00 1291.2 668 100.0
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 0.0e+00 1245.3 668 92.2
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 2.3e-269 932.2 668 69.5
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.9e-252 875.9 666 65.0
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 7.6e-249 864.0 668 66.3
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.2e-246 856.7 668 65.7
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.9e-244 849.4 668 63.6
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.1e-242 843.6 621 67.1
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.4e-242 843.2 667 63.9
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.3e-240 836.6 680 64.1
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.1e-238 829.3 665 62.1
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 5.1e-237 824.7 671 61.5
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 8.7e-237 823.9 669 62.0
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 8.1e-235 817.4 672 62.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.5e-233 811.6 611 65.3
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 5.8e-233 811.2 589 66.0
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 8.4e-232 807.4 682 60.0
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 3.2e-231 805.4 625 63.8
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 2.3e-229 799.3 643 62.2
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 6.7e-229 797.7 592 64.9
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 6.7e-229 797.7 679 59.4
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 8.7e-229 797.3 679 59.4
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.5e-228 796.6 657 60.3
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.5e-228 796.6 698 59.9
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.3e-227 793.5 680 59.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 1.6e-227 793.1 649 60.9
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.5e-225 786.6 671 61.3
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.0e-224 783.9 647 60.1
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.7e-224 783.1 674 59.3
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 5.5e-223 778.1 668 60.5
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 7.1e-223 777.7 646 62.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 9.3e-223 777.3 614 65.0
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 1.6e-222 776.5 668 58.7
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.1e-222 776.2 628 61.8
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.7e-222 775.8 668 58.5
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 3.5e-222 775.4 646 60.5
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.6e-222 775.0 651 60.1
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 7.9e-222 774.2 673 59.0
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.0e-221 773.9 605 63.3
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.3e-221 773.5 660 60.5
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 2.3e-221 772.7 644 60.9
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.0e-221 772.3 668 58.7
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.0e-221 772.3 641 61.6
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 3.9e-221 771.9 628 61.9
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 5.1e-221 771.5 662 61.0
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 5.1e-221 771.5 641 60.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 6.7e-221 771.2 667 60.9
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.1e-220 770.4 670 58.4
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 4.3e-220 768.5 665 60.2
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 5.7e-220 768.1 629 61.2
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 7.4e-220 767.7 667 58.0
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 7.4e-220 767.7 660 61.4
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.3e-219 766.9 622 61.7
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 2.2e-219 766.1 602 63.3
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 3.7e-219 765.4 643 60.5
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 3.7e-219 765.4 661 61.1
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 3.7e-219 765.4 667 58.2
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 6.3e-219 764.6 668 59.1
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.4e-218 763.5 667 57.7
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.8e-218 763.1 647 61.2
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 3.1e-218 762.3 673 57.5
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 5.3e-218 761.5 668 57.9
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 1.2e-217 760.4 611 61.5
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 1.5e-217 760.0 669 59.0
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 2.0e-217 759.6 645 60.8
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.0e-217 759.6 606 63.4
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 5.9e-217 758.1 600 63.7
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 3.8e-216 755.4 592 62.7
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 3.8e-216 755.4 664 57.7
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.1e-215 753.8 664 57.2
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 2.5e-215 752.7 661 57.8
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 1.8e-213 746.5 590 62.9
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.8e-211 739.2 613 60.4
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.8e-211 738.4 620 60.5
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 5.3e-210 734.9 611 59.6
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 6.9e-210 734.6 589 62.3
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 5.9e-209 731.5 671 55.4
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 5.9e-209 731.5 628 59.4
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 2.2e-208 729.6 664 56.8
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 5.0e-208 728.4 672 56.0
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.9e-207 726.5 663 56.1
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 9.4e-207 724.2 601 59.4
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.6e-206 723.4 665 56.4
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 2.1e-206 723.0 612 59.2
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 4.7e-206 721.8 668 57.6
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 2.3e-205 719.5 666 55.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.3e-205 719.5 585 61.0
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 6.7e-205 718.0 666 55.4
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 8.8e-205 717.6 671 55.0
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 8.8e-205 717.6 701 55.5
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 4.8e-203 711.8 604 59.3
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 4.1e-202 708.8 664 54.5
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 5.3e-202 708.4 618 56.6
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.5e-201 706.8 664 54.5
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.9e-200 702.6 663 54.1
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.0e-196 689.9 583 60.4
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 2.6e-196 689.5 549 62.7
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.7e-195 685.6 641 55.5
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 3.1e-194 682.6 585 58.5
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 2.2e-192 676.4 613 55.3
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.3e-189 666.4 574 59.8
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.2e-175 619.0 568 55.3
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.0e-160 571.2 496 56.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.1e-157 561.2 703 45.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.3e-151 539.3 600 50.0
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.0e-140 503.8 590 49.0
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.1e-138 498.0 513 51.9
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.2e-137 494.6 439 56.0
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.9e-130 470.7 460 51.5
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 1.5e-124 451.1 632 43.5
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 3.0e-120 436.8 786 36.6
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.6e-116 423.7 665 40.0
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.4e-109 401.4 335 61.5
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 8.4e-107 392.1 397 52.6
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 6.7e-104 382.5 521 41.3
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 7.0e-85 319.3 218 68.8
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.7e-75 288.1 235 60.4
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.7e-70 271.6 206 66.5
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 3.1e-69 267.3 648 30.9
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.4e-64 251.9 211 59.2
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 2.3e-64 251.1 326 42.9
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 7.5e-63 246.1 230 53.9
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 7.2e-58 229.6 697 30.6
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 8.0e-57 226.1 388 39.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.2e-55 222.2 659 29.6
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.5e-52 210.7 632 28.0
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 2.0e-44 184.9 121 76.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.3e-43 182.2 118 75.4
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.3e-42 176.4 239 43.1
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.2e-41 175.6 239 43.5
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.7e-38 165.2 147 55.1
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 3.9e-35 154.1 120 63.3
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.9e-32 142.9 161 49.7
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-31 142.1 183 42.1
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.6e-31 139.8 106 60.4
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.1e-29 136.0 142 53.5
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.8e-28 129.8 260 36.9
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.3e-27 128.3 260 36.5
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.3e-27 128.3 260 36.5
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 3.9e-27 127.5 73 80.8
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.6e-27 126.3 249 35.7
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.6e-27 126.3 249 35.7
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 5.8e-23 113.6 168 43.5
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.4e-22 109.8 130 45.4
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.4e-21 109.0 130 45.4
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.9e-21 108.6 130 44.6
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.4e-21 108.2 130 45.4
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 7.8e-20 103.2 62 83.9
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.9e-18 98.6 62 80.6
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 1.6e-17 95.5 62 79.0
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 1.1e-16 92.8 113 44.2
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 2.4e-13 81.6 71 54.9
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 9.3e-13 79.7 71 54.9
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 5.6e-10 70.5 50 64.0
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 3.6e-09 67.8 40 75.0


User provided reference genes

Program Settings