Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.3e-67 260.0 174 100.0
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 9.1e-61 237.3 175 95.4
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.1e-45 187.2 166 69.3
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.0e-44 183.0 174 63.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-44 183.0 174 63.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-44 183.0 174 63.2
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.5e-44 181.8 174 65.5
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.9e-44 181.4 165 67.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.7e-43 179.9 174 62.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 5.0e-43 178.3 166 75.9
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 8.5e-43 177.6 166 75.9
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 8.5e-43 177.6 166 75.9
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 7.2e-42 174.5 166 63.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.2e-41 173.7 174 65.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.2e-41 173.7 168 77.4
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.1e-41 172.9 174 73.0
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.7e-41 172.6 173 73.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.0e-40 170.6 176 61.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.3e-40 169.5 177 50.3
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.0e-40 169.1 166 64.5
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.0e-40 168.7 164 75.6
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 5.2e-40 168.3 174 63.8
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.7e-40 167.9 174 63.8
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.3e-39 165.6 159 68.6
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.4e-39 165.2 166 60.8
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.7e-38 163.3 165 59.4
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.2e-38 162.9 174 71.3
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 2.8e-38 162.5 150 74.7
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.7e-38 162.2 168 75.0
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 4.8e-38 161.8 174 71.8
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 8.2e-38 161.0 174 70.7
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.4e-37 160.2 165 64.2
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.4e-37 160.2 156 76.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.8e-37 159.8 171 73.7
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.4e-37 159.5 168 60.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 5.3e-37 158.3 165 74.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 169 74.6
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 169 74.6
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 7.0e-37 157.9 166 59.0
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 9.1e-37 157.5 166 59.0
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 9.1e-37 157.5 166 62.0
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.2e-36 157.1 160 73.1
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.0e-36 156.4 173 62.4
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.5e-36 155.2 151 75.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 5.9e-36 154.8 169 62.7
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-35 153.7 159 59.7
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.3e-35 153.7 174 70.7
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.2e-35 152.9 165 73.3
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 2.2e-35 152.9 174 70.1
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 6.5e-35 151.4 182 68.1
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 8.5e-35 151.0 169 56.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 8.5e-35 151.0 171 69.0
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 8.5e-35 151.0 164 62.2
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 8.5e-35 151.0 164 62.8
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 8.5e-35 151.0 174 69.5
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.1e-34 150.6 159 59.1
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.5e-34 150.2 145 75.2
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.5e-34 150.2 175 54.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.9e-34 149.8 175 69.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.5e-34 149.4 162 72.2
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.2e-34 148.7 159 62.9
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 9.4e-34 147.5 153 60.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 9.4e-34 147.5 165 57.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.2e-33 147.1 165 67.9
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.2e-33 147.1 170 70.6
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.6e-33 146.7 164 71.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.6e-33 146.7 164 71.3
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.6e-33 146.7 164 70.1
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 2.1e-33 146.4 163 69.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.6e-33 145.6 159 66.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 3.6e-33 145.6 174 69.5
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.7e-33 145.2 175 66.3
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 8.0e-33 144.4 173 57.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.0e-32 144.1 164 70.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.3e-32 142.9 159 58.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.3e-32 142.9 159 71.1
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.3e-32 142.9 164 68.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.3e-32 142.9 159 62.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.3e-32 142.9 237 38.0
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.0e-32 142.5 162 71.6
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.0e-32 142.5 165 69.1
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 5.2e-32 141.7 158 72.2
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.2e-32 141.7 174 70.1
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 6.8e-32 141.4 173 56.6
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.8e-32 141.4 164 68.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 6.8e-32 141.4 174 68.4
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 6.8e-32 141.4 158 72.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.2e-31 140.6 174 60.3
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.4e-31 139.0 175 45.7
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 5.7e-31 138.3 159 50.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 7.5e-31 137.9 175 45.1
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 9.8e-31 137.5 165 56.4
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 173 53.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.3e-30 137.1 154 48.7
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 2.2e-30 136.3 148 48.0
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.8e-30 136.0 169 45.0
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 8.3e-30 134.4 172 66.3
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 8.3e-30 134.4 171 60.8
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.4e-29 133.7 161 47.2
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.1e-29 132.5 173 53.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 5.4e-29 131.7 169 66.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 7.0e-29 131.3 161 68.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 9.1e-29 131.0 159 56.0
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 171 56.1
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 152 56.6
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.2e-28 130.6 161 54.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.6e-28 130.2 167 55.1
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.6e-28 130.2 139 64.7
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-28 129.8 157 54.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-28 129.8 157 54.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.0e-28 129.8 157 54.8
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.0e-28 129.8 164 54.3
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.7e-28 129.4 167 54.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.7e-28 129.4 167 54.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.7e-28 129.4 165 45.5
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.5e-28 128.6 174 64.4
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 4.5e-28 128.6 162 53.7
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 4.5e-28 128.6 169 65.7
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 5.9e-28 128.3 163 66.9
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 5.9e-28 128.3 163 66.3
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 7.7e-28 127.9 163 66.3
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 7.7e-28 127.9 163 66.3
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.0e-27 127.5 168 52.4
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.0e-27 127.5 157 71.3
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.3e-27 127.1 165 65.5
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.3e-27 126.3 159 52.8
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.5e-27 124.8 173 51.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 8.6e-27 124.4 173 52.0
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 8.6e-27 124.4 173 52.0
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.5e-26 123.6 173 52.0
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 7.2e-26 121.3 171 58.5
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 7.2e-26 121.3 129 66.7
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.6e-25 120.2 170 64.1
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 3.0e-24 115.9 161 50.3
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.9e-24 114.4 165 63.6
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.0e-23 113.2 126 66.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.0e-23 113.2 148 56.1
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.7e-22 109.0 131 71.8
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.9e-22 108.6 84 61.9
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 7.0e-21 104.8 145 55.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.5e-20 102.4 121 64.5
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.0e-19 100.9 131 57.3
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.7e-19 100.1 111 64.9
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.6e-17 93.6 90 68.9
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.0e-16 90.9 112 41.1
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 4.0e-16 89.0 102 63.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.2e-14 83.2 102 59.8
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 4.1e-13 79.0 82 48.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.2e-09 67.4 43 72.1
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 3.1e-08 62.8 42 69.0


User provided reference genes

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