Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 4.1e-84 314.7 158 100.0
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.0e-79 300.1 158 95.6
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 9.1e-52 207.2 154 64.9
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 9.1e-52 207.2 155 65.2
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 1.1e-49 200.3 154 62.3
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 7.2e-49 197.6 142 64.1
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 9.4e-49 197.2 154 62.3
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.2e-48 196.8 154 63.6
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.2e-48 196.8 154 60.4
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 8.0e-48 194.1 156 62.8
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.0e-47 193.7 154 62.3
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.8e-47 193.0 137 66.4
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.2e-46 190.3 154 59.7
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.2e-46 190.3 142 62.0
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 1.2e-46 190.3 155 59.4
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.5e-46 189.9 154 60.4
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 4.4e-46 188.3 156 60.3
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 4.4e-46 188.3 156 57.7
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.4e-46 188.3 153 60.1
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 2.2e-45 186.0 156 59.6
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 2.2e-45 186.0 154 60.4
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.8e-45 185.7 147 58.5
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.7e-45 185.3 144 61.1
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 3.7e-45 185.3 141 61.0
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 6.3e-45 184.5 155 59.4
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 6.3e-45 184.5 155 53.5
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 6.3e-45 184.5 155 56.8
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 6.3e-45 184.5 155 56.8
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 6.3e-45 184.5 137 61.3
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 8.3e-45 184.1 156 55.1
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 8.3e-45 184.1 156 60.9
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.1e-44 183.7 154 59.1
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 3.1e-44 182.2 137 60.6
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 5.4e-44 181.4 152 57.2
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 5.4e-44 181.4 154 59.1
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 7.0e-44 181.0 156 57.7
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 7.0e-44 181.0 155 58.1
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 9.1e-44 180.6 156 59.0
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 9.1e-44 180.6 155 58.1
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 9.1e-44 180.6 155 58.1
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 2.0e-43 179.5 132 62.1
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 2.0e-43 179.5 155 54.8
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 2.0e-43 179.5 137 59.1
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 2.0e-43 179.5 156 57.7
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 2.7e-43 179.1 155 56.1
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.5e-43 178.3 154 55.8
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 4.5e-43 178.3 152 56.6
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 5.9e-43 177.9 157 56.1
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 5.9e-43 177.9 154 59.7
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 7.7e-43 177.6 155 56.1
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 7.7e-43 177.6 155 59.4
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 1.0e-42 177.2 155 54.8
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 1.0e-42 177.2 140 60.7
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.3e-42 176.8 156 56.4
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 2.2e-42 176.0 155 52.3
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 2.9e-42 175.6 155 56.1
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 3.8e-42 175.3 141 57.4
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 5.0e-42 174.9 155 55.5
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 5.0e-42 174.9 154 59.1
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 6.5e-42 174.5 154 53.9
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 8.5e-42 174.1 155 56.1
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.1e-41 173.7 154 54.5
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.9e-41 172.9 155 54.2
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 1.9e-41 172.9 138 58.7
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.9e-41 172.9 154 55.2
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 2.5e-41 172.6 152 54.6
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 3.2e-41 172.2 154 53.9
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.2e-41 171.8 143 58.7
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 4.2e-41 171.8 150 55.3
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 5.5e-41 171.4 137 56.9
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 7.2e-41 171.0 142 56.3
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 9.5e-41 170.6 138 58.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.6e-40 169.9 138 58.0
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 2.1e-40 169.5 157 55.4
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 2.7e-40 169.1 153 54.2
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.7e-40 169.1 137 56.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 4.7e-40 168.3 154 53.2
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 4.7e-40 168.3 155 54.8
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.7e-40 168.3 156 52.6
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 6.1e-40 167.9 155 54.2
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 8.0e-40 167.5 154 52.6
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 8.0e-40 167.5 155 54.8
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 8.0e-40 167.5 156 52.6
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 1.0e-39 167.2 152 55.3
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.0e-39 167.2 130 60.0
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.8e-39 166.4 154 51.9
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 1.8e-39 166.4 153 52.9
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 5.2e-39 164.9 153 52.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.6e-38 162.5 153 52.3
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 4.4e-38 161.8 156 52.6
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.3e-37 160.2 157 49.0
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.7e-37 159.8 153 51.0
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.2e-37 159.5 135 54.1
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.2e-37 159.5 148 52.0
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 2.8e-37 159.1 137 54.7
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 8.3e-37 157.5 136 56.6
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 1.8e-36 156.4 157 52.2
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 1.8e-36 156.4 129 58.9
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 1.8e-36 156.4 141 56.0
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 7.0e-36 154.5 132 56.8
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.7e-34 149.8 133 57.9
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 2.9e-34 149.1 130 52.3
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 5.0e-34 148.3 131 57.3
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 6.6e-34 147.9 151 52.3
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.9e-33 146.4 107 62.6
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 2.8e-32 142.5 141 53.2
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.0e-31 140.6 112 60.7
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 1.4e-31 140.2 112 59.8
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 6.8e-31 137.9 116 56.0
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 5.7e-30 134.8 126 55.6
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 5.7e-30 134.8 129 46.5
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.1e-28 130.6 150 48.7
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.5e-27 125.6 156 44.2
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 3.9e-26 122.1 134 43.3
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 5.6e-25 118.2 149 45.0
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.0e-23 114.0 78 62.8
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 4.0e-23 112.1 125 49.6
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 2.6e-22 109.4 132 43.2
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 1.0e-18 97.4 88 55.7
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 3.9e-18 95.5 90 52.2
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.1e-17 94.0 176 36.9
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 1.1e-17 94.0 152 38.2
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 4.7e-16 88.6 139 41.0
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 6.4e-13 78.2 131 36.6
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 3.2e-12 75.9 95 41.1
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 7.1e-12 74.7 76 47.4
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 9.2e-12 74.3 64 54.7
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.2e-11 73.9 90 45.6
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 6.0e-11 71.6 69 49.3


User provided reference genes

Program Settings