Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 0.0e+00 2500.3 1233 100.0
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1181.4 1332 49.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 2.3e-307 1059.3 1310 46.0
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 7.1e-301 1037.7 1310 46.3
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 4.9e-294 1015.0 1293 46.2
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 8.7e-291 1004.2 1294 45.6
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 5.6e-290 1001.5 1290 45.6
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 1.3e-286 990.3 1272 45.2
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 1.7e-286 989.9 1294 44.6
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 2.6e-279 966.1 1345 42.5
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 3.0e-275 952.6 1239 45.1
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 5.1e-275 951.8 1265 44.4
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 8.1e-273 944.5 1296 43.7
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 8.1e-273 944.5 1363 41.1
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.2e-271 940.6 1297 43.5
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 5.8e-271 938.3 1300 43.4
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 7.6e-271 937.9 1311 43.1
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 2.9e-270 936.0 1265 43.1
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 3.0e-267 926.0 1273 43.2
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 1.4e-264 917.1 1276 42.9
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 4.5e-263 912.1 1337 41.8
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 2.2e-262 909.8 1288 41.7
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 3.5e-260 902.5 1299 42.0
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 1.0e-259 901.0 1442 40.0
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 3.0e-259 899.4 1271 42.6
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 2.4e-256 889.8 1287 41.8
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 3.1e-256 889.4 1276 41.9
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 3.4e-255 885.9 1295 40.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 3.6e-252 875.9 1290 41.5
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.0e-251 874.4 1279 41.8
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.4e-251 874.0 1321 40.1
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 1.8e-251 873.6 1292 40.3
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 3.3e-250 869.4 1279 41.4
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.7e-249 865.9 1297 39.3
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.8e-249 865.5 1263 39.4
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 2.4e-248 863.2 1298 39.8
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 2.2e-246 856.7 1301 41.0
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 4.7e-244 849.0 1275 40.6
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 2.2e-238 830.1 1286 39.8
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 6.5e-238 828.6 1286 39.8
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.1e-237 827.8 1286 39.8
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 5.2e-235 818.9 1282 38.6
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 3.7e-233 812.8 1281 38.5
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 8.2e-233 811.6 1018 45.3
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 7.0e-224 781.9 1318 37.3
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 1.0e-222 778.1 1116 41.9
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 3.6e-220 769.6 1064 43.1
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.0e-219 768.1 1302 36.1
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 9.2e-216 755.0 1279 38.2
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 2.7e-215 753.4 1292 37.5
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 2.7e-215 753.4 1313 36.3
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 5.2e-211 739.2 1246 37.6
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 3.7e-209 733.0 1286 37.5
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 7.8e-207 725.3 1245 36.5
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 1.3e-206 724.5 1313 36.1
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.1e-205 721.5 1291 37.3
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 3.2e-192 676.8 1179 37.7
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 9.2e-192 675.2 1263 35.3
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 7.8e-191 672.2 997 39.8
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.2e-188 664.8 877 42.1
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 2.1e-188 664.1 1266 35.4
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 3.6e-188 663.3 1271 35.2
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 3.1e-187 660.2 1266 35.3
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 8.9e-187 658.7 1276 34.9
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 8.9e-187 658.7 827 45.1
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.0e-186 657.5 1259 34.2
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 3.2e-184 650.2 1284 34.5
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 4.1e-184 649.8 1267 34.4
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 5.1e-182 642.9 1270 34.4
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 2.4e-179 634.0 756 45.2
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 2.2e-177 627.5 1279 33.8
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.4e-168 598.2 865 40.6
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 3.3e-165 587.0 897 40.4
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.9e-157 561.2 1486 28.5
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 4.8e-156 556.6 1264 32.9
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 2.4e-155 554.3 1135 35.3
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 1.4e-152 545.0 915 37.3
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 1.4e-147 528.5 930 36.6
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 4.5e-138 496.9 1105 32.6
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 5.0e-137 493.4 253 94.9
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 5.9e-130 469.9 592 45.1
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.0e-125 454.9 833 35.1
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 5.9e-122 443.4 1332 27.6
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 3.0e-118 431.0 884 32.1
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 5.7e-117 426.8 791 33.9
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.3e-108 399.1 848 32.4
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 8.6e-105 386.3 380 53.9
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 2.1e-103 381.7 383 53.0
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 7.8e-98 363.2 901 31.3
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.1e-95 355.1 383 47.5
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 1.8e-94 352.1 393 47.3
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 5.2e-94 350.5 378 50.5
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 1.4e-86 325.9 327 52.3
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 6.8e-86 323.6 466 38.6
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 4.9e-84 317.4 388 44.1
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 3.9e-73 281.2 276 51.8
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 1.6e-66 259.2 955 25.7
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 8.1e-63 246.9 373 38.9
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 4.4e-61 241.1 337 43.9
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.9e-60 238.4 449 35.6
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.2e-59 235.0 471 30.8
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.2e-59 235.0 352 39.5
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.2e-59 235.0 352 39.5
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 1.5e-56 226.1 125 92.0
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 7.1e-51 207.2 206 51.0
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 3.5e-50 204.9 181 55.2
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.3e-49 202.2 199 52.3
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 4.3e-48 198.0 255 42.4
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.3e-44 186.4 630 24.6
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 9.3e-43 180.3 296 35.1
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 6.0e-42 177.6 185 49.2
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.9e-41 174.9 178 52.8
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 8.4e-36 157.1 249 41.0
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.6e-31 142.9 216 37.5
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.4e-30 139.8 187 42.8
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 4.1e-30 138.3 146 45.9
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 6.7e-25 120.9 182 40.1
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 8.8e-25 120.6 335 28.4
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 8.2e-23 114.0 199 36.2
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 5.9e-21 107.8 124 41.9
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 6.3e-15 87.8 140 39.3
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 7.0e-14 84.3 82 53.7
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.5e-13 83.2 150 33.3
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 1.0e-12 80.5 98 43.9
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.3e-12 80.1 306 27.8
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.4e-11 76.6 68 54.4
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.2e-11 75.1 82 51.2
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.5e-11 74.7 82 51.2
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 7.2e-11 74.3 88 46.6
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 4.7e-10 71.6 100 40.0
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 6.1e-10 71.2 80 45.0
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.0e-08 66.2 82 47.6
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.8e-07 62.4 113 32.7
HPP92_011289 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.8e-07 62.4 170 27.1
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 5.3e-06 58.2 84 41.7
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 9.1e-06 57.4 247 26.7


User provided reference genes

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