Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-96 356.3 178 100.0
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.7e-84 315.5 177 91.0
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.2e-77 292.0 158 91.8
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 4.1e-77 291.6 158 91.8
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-76 290.0 158 91.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 7.8e-76 287.3 158 91.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-74 283.5 158 89.9
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.7e-68 262.3 158 80.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 3.5e-68 261.9 158 79.7
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.9e-67 258.5 158 79.7
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 6.6e-67 257.7 158 78.5
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 8.6e-67 257.3 158 78.5
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 8.6e-67 257.3 156 78.2
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.3e-66 255.4 158 77.2
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 3.3e-66 255.4 158 79.1
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.3e-66 255.0 158 79.1
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 4.3e-66 255.0 158 77.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.6e-66 254.6 158 78.5
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 5.6e-66 254.6 154 78.6
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 7.3e-66 254.2 158 76.6
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 7.3e-66 254.2 158 77.8
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.3e-66 254.2 158 78.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 7.3e-66 254.2 158 75.9
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 9.6e-66 253.8 158 77.2
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 9.6e-66 253.8 158 77.2
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.6e-66 253.8 158 78.5
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.6e-66 253.8 158 78.5
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 9.6e-66 253.8 158 76.6
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 9.6e-66 253.8 165 74.5
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.6e-65 253.1 158 77.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.1e-65 252.7 158 77.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.8e-65 252.3 158 76.6
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 3.6e-65 251.9 158 75.9
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.6e-65 251.9 158 75.3
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 3.6e-65 251.9 158 75.9
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 4.7e-65 251.5 158 77.2
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 8.1e-65 250.8 158 75.9
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.1e-65 250.8 158 75.9
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.1e-64 250.4 167 73.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.1e-64 250.4 167 73.7
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.1e-64 250.4 158 76.6
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.1e-64 250.4 159 73.6
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.1e-64 250.4 158 75.3
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.4e-64 250.0 158 75.9
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.8e-64 249.6 158 77.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.4e-64 249.2 158 75.3
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.4e-64 249.2 158 76.6
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.4e-64 249.2 158 75.9
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 3.1e-64 248.8 150 79.3
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 75.3
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 75.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 75.9
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 75.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 73.4
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.0e-64 248.4 158 74.7
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 5.2e-64 248.1 158 73.4
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 5.2e-64 248.1 158 75.3
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 5.2e-64 248.1 158 75.3
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 6.9e-64 247.7 161 72.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 9.0e-64 247.3 158 73.4
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.0e-64 247.3 150 80.7
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 9.0e-64 247.3 158 75.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.2e-63 246.9 158 75.3
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.2e-63 246.9 158 74.7
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.2e-63 246.9 158 74.7
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.5e-63 246.5 158 73.4
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.5e-63 246.5 158 74.7
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.5e-63 246.5 158 74.7
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.6e-63 245.7 158 72.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.6e-63 245.7 158 74.7
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.4e-63 245.4 158 74.1
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.4e-63 245.4 158 75.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 7.6e-63 244.2 158 74.7
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 7.6e-63 244.2 158 72.8
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 7.6e-63 244.2 158 74.1
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 9.9e-63 243.8 158 74.1
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 9.9e-63 243.8 150 78.7
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.3e-62 243.4 150 78.7
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.8e-62 241.9 158 72.2
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 4.9e-62 241.5 150 76.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.9e-62 241.5 156 73.1
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 6.4e-62 241.1 181 67.4
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 6.4e-62 241.1 158 73.4
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.4e-61 240.0 150 76.7
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.4e-61 240.0 150 76.7
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.4e-61 240.0 158 72.2
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.4e-61 240.0 158 72.2
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.9e-61 239.6 158 72.8
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.9e-61 239.6 150 76.7
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.9e-61 239.6 162 71.6
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 4.2e-61 238.4 156 72.4
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 7.1e-61 237.7 158 71.5
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.1e-60 236.1 142 78.9
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.7e-60 235.7 158 71.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.6e-60 235.0 158 70.9
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.6e-60 235.0 145 78.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.3e-59 233.4 150 74.0
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.3e-59 232.6 150 74.0
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.3e-59 232.6 158 72.2
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.3e-59 232.6 145 75.2
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.0e-59 232.3 144 77.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.0e-59 232.3 149 76.5
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.9e-59 231.9 145 76.6
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.9e-58 229.6 150 76.0
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.5e-58 229.2 156 70.5
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 5.6e-58 228.0 170 65.9
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 5.6e-58 228.0 160 68.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 5.6e-58 228.0 158 67.7
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 7.3e-58 227.6 158 67.7
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 9.6e-58 227.3 159 69.8
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 8.1e-57 224.2 146 72.6
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 5.3e-56 221.5 140 73.6
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.5e-55 219.9 137 77.4
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.6e-55 219.2 137 78.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.3e-53 210.7 155 69.7
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.9e-52 207.6 158 65.2
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.6e-47 192.6 107 92.5
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 5.8e-47 191.4 149 58.4
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.9e-47 190.7 160 61.9
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 4.9e-46 188.3 135 68.9
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.5e-45 184.9 117 76.1
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.3e-43 179.5 155 52.3
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 3.3e-42 175.6 143 60.8
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.8e-41 172.6 109 76.1
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 4.0e-40 168.7 110 70.0
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.9e-40 167.9 140 62.1
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-39 166.8 117 70.9
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.8e-35 153.3 112 66.1
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 6.7e-35 151.4 145 48.3
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.9e-31 138.3 111 59.5
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 8.5e-30 134.4 93 68.8
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.2e-29 132.1 150 48.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 9.3e-29 131.0 81 74.1
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.6e-28 130.2 108 61.1
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.9e-28 127.9 70 82.9
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.3e-27 127.1 119 54.6
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.7e-27 124.8 81 71.6
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.7e-25 120.2 131 51.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.8e-24 116.7 82 68.3
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 4.1e-24 115.5 167 44.9
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.0e-23 113.2 81 66.7
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 2.9e-22 109.4 120 52.5
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.2e-20 104.0 63 81.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.3e-19 99.8 64 75.0
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.3e-17 91.7 81 58.0
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.4e-16 90.5 52 78.8
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 5.9e-15 85.1 66 57.6
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 4.7e-12 75.5 58 58.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 7.4e-10 68.2 61 45.9
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.1e-08 64.3 36 86.1


User provided reference genes

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