Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 0.0e+00 1410.6 748 100.0
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 0.0e+00 1283.9 748 92.0
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.3e-152 543.1 753 50.1
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.5e-147 526.9 753 48.1
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.6e-143 514.2 786 47.2
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 6.3e-143 512.3 730 48.6
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 7.2e-131 472.2 686 48.3
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.8e-129 467.6 775 44.0
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 5.7e-128 462.6 695 47.8
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 5.7e-128 462.6 695 47.8
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.8e-127 459.5 648 46.8
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 1.8e-126 457.6 663 47.4
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 7.0e-126 455.7 740 44.2
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.2e-125 454.9 689 47.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.5e-125 453.0 649 46.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.9e-124 450.3 710 46.1
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.9e-123 447.6 671 44.3
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.9e-123 447.6 649 46.7
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.9e-123 447.6 766 43.3
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 3.2e-123 446.8 705 44.3
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-122 444.9 672 46.1
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.2e-122 444.9 691 45.7
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.6e-122 444.5 676 46.4
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.1e-122 444.1 689 45.4
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.3e-121 440.7 673 46.1
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.0e-121 440.3 659 45.2
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.0e-121 439.9 693 44.6
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.7e-121 439.1 659 44.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.2e-120 438.3 672 47.0
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.5e-120 435.6 710 43.2
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.7e-119 434.5 653 45.8
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 1.7e-119 434.5 690 45.5
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.7e-119 434.5 680 44.6
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.8e-118 431.0 658 44.8
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 3.1e-118 430.3 652 45.1
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.3e-118 429.5 709 42.9
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 7.0e-118 429.1 703 43.4
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.5e-117 426.8 677 45.6
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.5e-117 426.4 733 42.2
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 7.7e-117 425.6 758 42.6
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.7e-116 424.5 695 44.7
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.2e-116 424.1 667 44.1
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.2e-116 424.1 654 45.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 5.0e-116 422.9 683 44.5
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 8.5e-116 422.2 688 43.3
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 9.4e-115 418.7 670 44.0
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.2e-114 418.3 685 44.1
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.6e-114 417.9 679 45.1
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.6e-114 417.9 684 43.6
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 2.3e-113 414.1 701 43.9
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 4.0e-113 413.3 666 43.7
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.6e-112 410.6 710 42.4
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 4.4e-112 409.8 644 43.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.8e-111 407.1 659 43.9
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.8e-111 407.1 659 44.0
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.1e-110 405.2 658 42.6
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.8e-110 404.4 654 43.9
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.0e-109 401.0 669 42.9
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 3.5e-109 400.2 659 43.9
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.7e-108 397.9 701 42.9
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 5.0e-108 396.4 680 41.9
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.5e-108 396.0 753 40.6
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.1e-107 395.2 757 39.4
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.9e-107 394.4 693 41.0
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.2e-107 393.7 691 42.5
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 5.5e-107 392.9 691 41.5
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 7.2e-107 392.5 731 42.5
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.2e-106 391.7 729 42.1
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.1e-106 391.0 696 41.5
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 4.7e-106 389.8 689 41.4
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 4.7e-106 389.8 684 42.1
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.3e-105 387.5 611 43.0
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 5.2e-105 386.3 675 41.3
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 6.8e-105 386.0 669 41.0
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 8.8e-105 385.6 703 40.3
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 3.4e-104 383.6 686 42.1
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.4e-104 383.3 714 39.6
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 4.4e-104 383.3 699 41.6
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 5.7e-104 382.9 679 42.1
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.8e-102 377.9 595 46.7
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.1e-98 364.4 592 42.6
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 3.6e-98 363.6 674 40.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.2e-97 359.8 622 41.2
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.5e-96 358.2 611 41.1
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 2.0e-96 357.8 669 41.3
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.4e-94 350.9 691 39.7
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 5.0e-92 343.2 666 38.3
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.4e-89 335.1 619 42.5
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.4e-89 335.1 613 41.4
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 3.1e-89 334.0 592 40.0
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 2.0e-88 331.3 697 37.7
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 4.4e-88 330.1 533 43.5
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 7.5e-88 329.3 719 36.3
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 4.3e-83 313.5 652 37.1
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 5.2e-81 306.6 554 40.1
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 3.7e-79 300.4 702 36.2
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 4.9e-79 300.1 661 36.6
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.5e-75 288.5 630 35.9
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.5e-75 287.7 660 36.1
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.5e-75 287.7 656 36.1
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 3.3e-75 287.3 657 36.2
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 3.3e-75 287.3 657 36.2
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 7.3e-75 286.2 676 35.5
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 3.6e-74 283.9 640 36.6
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 8.4e-71 272.7 317 53.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 8.7e-68 262.7 599 37.2
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 1.1e-67 262.3 245 58.8
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 6.2e-66 256.5 585 37.4
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 8.1e-66 256.1 552 37.7
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 8.1e-66 256.1 561 37.3
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 3.1e-65 254.2 501 40.1
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 2.7e-61 241.1 452 42.9
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 8.7e-60 236.1 277 50.9
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.3e-59 234.2 253 51.0
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.9e-54 218.4 512 38.1
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.3e-52 212.2 629 35.0
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 6.2e-50 203.4 543 33.9
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.6e-45 188.7 488 34.4
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.5e-43 181.4 242 44.6
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.8e-42 177.9 230 41.3
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.1e-41 176.0 294 37.8
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 3.7e-34 151.0 124 62.9
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-32 145.2 123 61.0
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.7e-31 142.1 116 63.8
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 1.7e-31 142.1 205 47.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.8e-31 141.0 192 42.2
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 5.1e-28 130.6 117 58.1
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.1e-27 129.4 130 55.4
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 5.7e-27 127.1 122 58.2
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 2.4e-25 121.7 121 49.6
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 3.1e-25 121.3 468 27.4
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 4.5e-24 117.5 228 36.0
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 1.7e-23 115.5 274 38.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 3.2e-22 111.3 133 51.9
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.4e-20 105.9 74 66.2
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.0e-19 102.1 104 48.1
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.8e-18 97.4 139 46.0
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 1.3e-15 89.4 84 56.0
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.2e-15 88.6 78 60.3
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.7e-13 81.6 72 58.3
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 1.8e-12 79.0 72 54.2
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.5e-11 75.9 75 53.3
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 4.4e-11 74.3 63 57.1
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 2.2e-10 72.0 50 68.0
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 2.4e-09 68.6 101 34.7
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.9e-07 61.6 50 58.0
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 3.8e-07 61.2 45 64.4


User provided reference genes

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