Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.5e-236 822.4 407 100.0
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 4.2e-234 814.3 407 98.5
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 9.7e-207 723.4 404 86.9
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.8e-206 721.8 404 86.9
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.9e-174 615.5 404 74.8
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 9.5e-170 600.5 406 72.2
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.1e-168 595.5 404 71.8
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 4.0e-168 595.1 404 71.5
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.5e-167 593.2 405 70.9
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.9e-166 589.0 405 71.1
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.1e-165 587.0 405 70.6
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.2e-165 585.5 408 69.4
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.2e-165 585.5 402 70.6
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.2e-165 585.5 402 70.6
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 4.1e-165 585.1 404 70.5
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 4.1e-165 585.1 404 70.5
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.2e-164 583.6 406 69.0
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.2e-164 583.6 405 69.9
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 3.5e-164 582.0 404 69.8
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.5e-164 582.0 405 70.1
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.0e-163 580.5 405 70.1
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.3e-163 580.1 405 70.1
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.7e-163 579.7 405 69.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 3.9e-163 578.6 405 69.9
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.1e-163 578.2 405 68.4
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 8.6e-163 577.4 405 69.6
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.3e-162 574.3 405 68.6
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 9.5e-162 573.9 405 68.4
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 9.5e-162 573.9 405 68.4
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.2e-161 573.5 405 68.4
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.6e-161 573.2 405 68.4
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.6e-161 572.0 406 68.5
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.7e-161 571.6 398 69.8
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.1e-160 570.5 398 69.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.4e-160 570.1 406 68.5
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 2.4e-160 569.3 407 67.8
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 5.2e-160 568.2 405 69.6
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.2e-159 567.0 406 68.2
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.4e-159 565.1 405 67.2
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.4e-159 565.1 400 69.0
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.2e-158 562.8 400 69.2
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 8.4e-158 560.8 404 67.1
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 8.4e-158 560.8 405 67.4
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-157 559.7 406 68.7
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.4e-157 559.3 405 67.2
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 3.2e-157 558.9 405 66.7
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.2e-157 558.9 405 67.4
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.2e-157 558.5 405 65.7
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.2e-157 558.5 405 65.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.2e-156 557.0 407 66.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.1e-156 556.2 407 66.8
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 2.1e-156 556.2 405 67.4
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.5e-156 555.4 399 67.9
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 3.5e-156 555.4 405 65.9
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 6.0e-156 554.7 405 67.9
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 6.0e-156 554.7 405 65.2
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.3e-155 553.5 406 67.0
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.7e-155 553.1 402 65.2
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 5.1e-155 551.6 406 66.5
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 5.1e-155 551.6 405 64.7
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.1e-154 550.4 405 65.9
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 1.5e-154 550.1 406 65.3
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.9e-154 549.7 398 66.6
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.9e-154 549.7 398 68.1
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.3e-154 548.9 405 64.9
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 3.3e-154 548.9 398 67.1
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 5.6e-154 548.1 400 65.8
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.2e-153 547.0 407 67.3
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.1e-153 546.2 406 65.5
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 4.7e-153 545.0 405 67.2
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 6.2e-153 544.7 404 63.9
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 8.1e-153 544.3 406 65.3
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.1e-152 543.9 405 66.4
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.1e-152 543.9 405 65.7
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.1e-152 543.9 405 65.4
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.4e-152 543.5 405 65.4
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.8e-152 543.1 409 65.0
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 2.4e-152 542.7 398 66.1
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.1e-152 542.3 406 65.5
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.0e-152 542.0 406 66.5
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 6.9e-152 541.2 409 64.5
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 9.0e-152 540.8 409 64.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 9.0e-152 540.8 409 64.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 9.0e-152 540.8 409 64.5
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.2e-151 540.4 408 65.0
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.2e-151 540.4 398 66.3
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.5e-151 540.0 406 65.0
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 2.6e-151 539.3 408 64.5
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.6e-151 539.3 399 65.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 4.4e-151 538.5 406 64.5
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 5.8e-151 538.1 405 64.0
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 9.9e-151 537.3 399 64.7
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 9.9e-151 537.3 428 62.9
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.3e-150 537.0 408 64.2
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 8.4e-150 534.3 403 64.8
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.1e-149 533.9 404 65.3
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.9e-149 533.1 437 62.2
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 9.3e-149 530.8 348 74.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.2e-148 530.4 399 64.9
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.2e-148 530.4 403 64.5
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.1e-148 529.6 403 63.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 6.0e-148 528.1 400 64.8
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 7.8e-148 527.7 399 63.4
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.3e-147 526.9 405 64.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.3e-147 526.2 405 64.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 5.1e-147 525.0 396 65.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 6.6e-147 524.6 491 56.6
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.1e-146 523.9 404 63.9
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.9e-146 523.1 398 65.3
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 7.3e-146 521.2 405 64.9
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 4.8e-145 518.5 356 70.8
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 5.3e-144 515.0 399 65.4
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 2.6e-143 512.7 399 65.4
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.8e-137 492.7 396 58.8
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.4e-136 490.3 400 59.5
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.5e-135 486.9 405 60.2
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.9e-133 479.9 406 59.9
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.8e-131 473.4 353 65.4
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.8e-131 473.4 414 56.3
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.9e-131 472.2 396 57.8
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 2.2e-126 456.4 310 71.3
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 3.9e-123 445.7 405 57.3
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.1e-117 427.6 379 57.0
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.6e-116 423.7 312 65.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.3e-106 389.4 405 49.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 9.7e-106 387.9 310 61.6
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 1.4e-104 384.0 273 69.2
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.6e-100 370.5 273 65.9
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 4.8e-97 359.0 405 43.7
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 6.3e-97 358.6 262 66.4
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 2.0e-95 353.6 408 46.6
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 7.5e-90 335.1 406 49.5
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.3e-83 313.5 399 42.1
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.4e-75 287.7 248 60.1
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.4e-74 283.1 437 38.9
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.4e-64 250.4 206 57.8
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 3.0e-62 243.4 161 74.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 8.6e-62 241.9 176 66.5
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 8.0e-60 235.3 166 67.5
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 3.1e-59 233.4 206 57.8
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 3.9e-54 216.5 174 59.8
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.6e-52 209.9 193 57.5
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 4.7e-52 209.5 339 35.1
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.2e-50 204.9 135 72.6
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.6e-47 194.5 148 63.5
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 9.6e-45 185.3 113 77.0
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.2e-33 147.5 93 73.1
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 5.1e-30 136.3 97 66.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 3.3e-21 107.1 97 57.7
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 2.6e-18 97.4 229 32.8
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 6.0e-15 86.3 70 58.6
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 5.7e-13 79.7 84 51.2
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.8e-10 69.7 61 52.5


User provided reference genes

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