Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 3762.2 1926 100.0
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2367.4 2004 63.9
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2335.1 2045 63.3
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2300.0 1985 62.5
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2293.1 2008 62.8
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2273.0 2009 62.8
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2267.7 2028 62.3
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2257.6 2009 62.0
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2253.0 1983 61.8
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2224.1 2049 60.2
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2216.4 2000 62.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2207.9 1998 60.6
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2188.3 1983 60.6
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2178.7 2131 58.6
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2176.7 1986 60.1
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2176.4 2010 60.3
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2131.3 2006 60.1
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2130.5 2011 59.6
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2110.9 2000 59.2
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2105.1 1997 59.2
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2103.6 2014 58.1
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2092.0 2001 58.2
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2087.8 1991 59.0
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2087.4 1998 59.2
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2087.0 1994 58.7
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2084.3 1999 58.3
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2082.8 2003 58.4
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2082.4 2003 58.8
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2082.4 1998 58.5
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2077.8 2010 58.7
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2072.0 2050 57.3
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2067.7 1998 58.0
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2060.8 1996 58.1
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2049.2 2110 55.8
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2049.2 2012 57.6
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2046.6 1986 57.6
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2044.2 1994 57.7
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2041.2 1975 58.8
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2035.8 2009 58.2
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2035.0 1994 57.8
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2032.7 2017 57.4
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2031.1 1991 57.8
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2028.1 2005 57.5
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2015.4 2003 57.3
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2013.0 1850 60.8
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2012.3 2044 56.4
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2009.6 2006 57.0
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2001.9 1986 57.2
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1998.8 1973 57.1
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1998.4 2028 57.8
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1996.9 2001 55.5
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1996.1 2005 56.9
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 1993.4 2007 57.6
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1987.2 2002 57.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1981.1 1999 56.3
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1973.0 2096 54.6
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1971.8 2055 55.6
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1969.9 1994 55.9
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1942.9 1985 55.9
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1938.3 1995 56.1
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1929.1 2068 55.4
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1919.4 1999 55.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1907.5 2010 55.2
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1896.7 1990 54.3
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1895.6 1991 54.7
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1879.8 1679 62.1
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1864.7 1992 54.5
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1842.4 1997 53.0
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1837.0 1988 53.0
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1834.3 2056 52.6
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1833.9 2001 52.9
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1825.8 2008 52.7
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1825.8 1979 52.9
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1819.3 1993 52.3
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1804.3 2013 52.0
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1803.9 1977 52.6
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1801.2 1981 52.5
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1785.4 2014 51.8
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1784.6 1971 52.5
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1780.8 2008 51.8
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1775.4 1987 51.9
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1767.7 2148 49.7
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1766.9 2005 51.4
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1763.8 1909 55.1
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1763.0 1884 54.2
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1753.8 1987 51.5
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1746.5 2015 51.0
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1701.0 1764 55.1
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1620.5 1985 49.4
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1611.3 1665 54.9
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1593.9 1755 52.8
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1593.2 2009 48.8
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1476.5 1431 59.7
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1466.8 1497 56.2
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1453.7 1371 59.5
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1409.8 1718 50.0
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1401.7 1903 46.1
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1367.8 1190 64.0
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1284.2 1564 48.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1271.1 1982 42.9
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1255.4 1239 56.8
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1221.5 1418 51.0
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1170.2 1164 57.3
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.6e-291 1007.3 781 67.9
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.4e-287 993.4 1056 54.5
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.5e-276 956.8 2146 34.5
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 8.0e-275 951.8 785 65.1
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.5e-273 947.6 967 55.3
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.6e-267 927.5 780 64.2
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 6.4e-240 835.9 2148 32.7
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.9e-236 824.3 840 56.2
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.0e-221 775.4 1188 42.7
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.1e-214 751.1 1278 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 9.9e-201 705.7 1961 31.2
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 3.4e-185 654.1 1912 30.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 4.1e-170 604.0 1003 40.6
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.6e-164 584.7 431 67.5
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.3e-156 557.8 1559 32.1
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.2e-155 555.1 597 53.3
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 7.5e-148 530.0 653 50.5
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.2e-142 512.7 541 54.2
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.8e-132 477.2 324 71.3
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.2e-116 426.4 492 50.6
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.4e-114 418.7 789 39.7
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 8.4e-107 393.7 403 52.9
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.7e-97 362.1 362 54.1
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.1e-96 357.8 291 66.7
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.1e-88 331.3 220 73.2
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-83 316.2 503 43.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.5e-83 314.3 322 58.1
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 8.2e-78 297.4 203 71.4
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 4.1e-77 295.0 243 64.6
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.5e-74 285.8 183 77.0
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 1.1e-71 276.9 384 47.9
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.6e-65 256.5 166 75.3
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-63 248.8 1098 25.8
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 9.7e-63 247.3 165 72.1
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 6.9e-61 241.1 195 67.7
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.3e-59 236.9 159 71.1
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.9e-58 233.0 295 47.5
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.0e-53 214.5 161 65.8
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 5.5e-50 204.9 245 51.0
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-46 193.7 302 40.7
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.1e-45 190.7 325 36.9
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.1e-45 188.7 125 70.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.7e-43 183.3 417 34.3
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 2.7e-41 176.0 265 42.6
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.4e-37 163.7 623 28.4
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 1.6e-33 150.2 388 35.6
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 5.7e-31 141.7 336 36.6
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 5.4e-29 135.2 71 78.9
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-27 130.6 87 73.6
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 9.5e-26 124.4 131 55.0
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 2.6e-23 116.3 142 46.5
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 4.1e-21 109.0 87 69.0
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 6.6e-19 101.7 162 40.1
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-18 100.9 138 47.8
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 1.0e-16 94.4 83 61.4
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 1.0e-16 94.4 83 61.4
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.8e-16 93.6 156 41.0
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.8e-16 93.6 68 64.7
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 8.9e-16 91.3 157 41.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 7.5e-15 88.2 182 39.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-14 87.0 116 45.7
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 6.0e-12 78.6 44 75.0
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 6.0e-12 78.6 44 75.0
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 6.6e-11 75.1 128 42.2
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.9e-10 73.6 169 36.1
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-08 67.4 117 35.0
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.8e-08 67.0 67 50.7
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 4.0e-08 65.9 94 38.3
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 3.4e-07 62.8 98 40.8


User provided reference genes

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