Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 1.2e-64 250.0 157 100.0
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 5.3e-60 234.6 157 96.8
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 2.0e-27 126.3 148 64.9
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 2.0e-22 109.8 157 57.3
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 5.7e-22 108.2 150 58.7
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 1.8e-20 103.2 147 59.2
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.2e-19 100.5 151 53.0
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 7.7e-19 97.8 153 53.6
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.3e-18 97.1 153 53.6
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.3e-18 96.3 144 45.8
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.9e-18 95.9 151 47.7
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 5.0e-18 95.1 153 53.6
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 6.5e-18 94.7 124 51.6
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 2.5e-17 92.8 148 53.4
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 2.5e-17 92.8 153 52.3
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 2.5e-17 92.8 127 58.3
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 3.6e-16 89.0 160 45.6
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.6e-16 89.0 151 52.3
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.6e-16 89.0 151 52.3
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 3.6e-16 89.0 154 43.5
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 4.7e-16 88.6 155 45.2
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 4.7e-16 88.6 145 53.8
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 8.0e-16 87.8 153 53.6
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 3.0e-15 85.9 151 49.0
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 5.2e-15 85.1 153 53.6
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 6.8e-15 84.7 158 43.7
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 8.9e-15 84.3 155 51.0
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 2.0e-14 83.2 170 48.8
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 2.6e-14 82.8 145 44.1
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 5.7e-14 81.6 147 49.0
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 7.5e-14 81.3 149 48.3
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 2.8e-13 79.3 136 41.9
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 1.1e-12 77.4 163 41.7
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.4e-12 77.0 151 37.7
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 2.4e-12 76.3 146 52.1
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 4.1e-12 75.5 122 44.3
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 5.4e-12 75.1 142 41.5
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.2e-11 73.9 152 43.4
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 2.0e-11 73.2 148 41.9
Actinidia24546 Actinidia chinensis HOM05D005060 ORTHO05D005975 2.7e-11 72.8 100 62.0
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 3.5e-11 72.4 147 39.5
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.0e-10 70.9 151 43.7
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 1.0e-10 70.9 151 38.4
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 1.7e-10 70.1 148 42.6
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 3.8e-10 68.9 147 51.7
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 3.8e-10 68.9 142 40.1
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 5.0e-10 68.6 140 40.0
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 6.6e-10 68.2 149 38.3
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 8.6e-10 67.8 138 44.2
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 1.1e-09 67.4 153 45.8
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.1e-09 67.4 153 41.8
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 1.5e-09 67.0 154 39.6
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 2.5e-09 66.2 162 50.0
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 2.5e-09 66.2 148 45.9
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 3.3e-09 65.9 150 42.0
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 3.3e-09 65.9 128 45.3
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 9.5e-09 64.3 153 46.4
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 9.5e-09 64.3 153 37.3
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 1.2e-08 63.9 155 38.7
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 2.8e-08 62.8 154 51.3
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 3.6e-08 62.4 124 50.8
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.7e-08 62.0 156 37.8
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.1e-08 61.6 114 51.8
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 6.1e-08 61.6 154 43.5
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 8.0e-08 61.2 159 37.7
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.0e-07 60.8 145 44.8
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 1.4e-07 60.5 162 37.7
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 2.3e-07 59.7 162 39.5
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 3.0e-07 59.3 118 50.8
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 3.0e-07 59.3 149 43.0
Solyc10g077090.2 Solanum lycopersicum HOM05D005060 ORTHO05D005975 3.0e-07 59.3 153 45.8
CDE04G0407 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 4.0e-07 58.9 154 50.0
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 5.2e-07 58.5 148 46.6
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 5.2e-07 58.5 157 40.1
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 6.8e-07 58.2 158 35.4
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 8.9e-07 57.8 149 36.9
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.2e-06 57.4 122 39.3
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 1.2e-06 57.4 149 47.7
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.5e-06 57.0 146 34.9
AUR62020993 Chenopodium quinoa HOM05D005060 ORTHO05D005975 2.0e-06 56.6 97 53.6
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 2.0e-06 56.6 152 39.5
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 2.0e-06 56.6 138 34.8
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 2.6e-06 56.2 101 42.6
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.6e-06 56.2 146 42.5
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 4.4e-06 55.5 154 35.1
Atru.chr1.1518 Acer truncatum HOM05D005060 ORTHO05D005975 5.8e-06 55.1 153 45.8
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 5.8e-06 55.1 153 44.4
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 5.8e-06 55.1 149 34.9
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 5.8e-06 55.1 92 40.2
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 9.8e-06 54.3 153 35.9


User provided reference genes

Program Settings