Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.9e-133 479.2 240 100.0
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.6e-130 468.8 240 97.9
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.1e-88 330.5 243 72.0
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.1e-88 328.6 245 71.4
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.1e-88 328.6 241 69.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 4.6e-87 325.1 245 69.4
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 4.6e-87 325.1 245 70.6
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 7.8e-87 324.3 245 71.8
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.8e-87 324.3 242 69.0
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.3e-86 323.6 245 70.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.3e-86 323.6 245 70.6
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.7e-86 323.2 245 68.2
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 2.3e-86 322.8 245 69.4
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 5.0e-86 321.6 245 70.2
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.1e-85 320.5 243 70.4
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.3e-85 318.9 244 68.0
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 5.6e-85 318.2 241 68.0
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 7.3e-85 317.8 245 68.6
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.1e-84 316.2 245 67.8
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 2.1e-84 316.2 245 69.4
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.6e-84 315.5 248 67.7
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 6.2e-84 314.7 245 69.0
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 6.2e-84 314.7 246 70.3
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 8.0e-84 314.3 244 69.3
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.4e-83 313.5 252 65.5
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.3e-83 312.8 249 68.7
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 3.1e-83 312.4 245 69.4
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 3.1e-83 312.4 245 69.4
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.0e-83 312.0 246 67.9
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-83 312.0 246 67.9
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-83 312.0 246 67.9
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 8.9e-83 310.8 245 69.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.2e-82 310.5 245 68.2
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.5e-82 310.1 220 70.9
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.0e-82 309.7 245 68.2
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.6e-82 309.3 244 68.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.6e-82 309.3 245 69.0
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 3.4e-82 308.9 248 68.5
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 3.4e-82 308.9 241 67.2
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.5e-82 307.8 245 68.6
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.8e-82 307.4 246 67.1
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.2e-81 306.2 256 64.1
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 3.7e-81 305.4 248 67.7
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 3.7e-81 305.4 244 67.2
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 3.7e-81 305.4 240 65.0
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 3.7e-81 305.4 245 67.3
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 8.3e-81 304.3 244 65.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.4e-80 303.5 246 66.3
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.9e-80 303.1 242 66.1
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.4e-80 302.8 221 70.6
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 2.4e-80 302.8 244 65.6
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.2e-79 300.4 240 63.3
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.6e-79 300.1 248 64.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 2.0e-79 299.7 248 67.3
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.7e-79 299.3 227 70.5
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 6.0e-79 298.1 244 64.3
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 6.0e-79 298.1 255 62.7
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 6.6e-78 294.7 255 62.4
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 6.6e-78 294.7 241 64.7
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.1e-77 293.9 245 63.7
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.1e-77 293.9 229 67.7
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.5e-77 293.5 236 66.1
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.9e-77 293.1 245 64.5
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.9e-77 293.1 247 64.4
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.5e-77 292.7 221 69.7
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.3e-77 292.4 251 61.8
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 4.3e-77 292.0 245 66.1
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 7.3e-77 291.2 246 63.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 7.3e-77 291.2 245 64.1
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 9.5e-77 290.8 245 62.4
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.1e-76 289.7 250 64.4
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.7e-76 288.5 190 78.4
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 6.2e-76 288.1 245 62.4
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 8.1e-76 287.7 198 73.2
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.1e-75 287.3 206 71.4
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 1.1e-75 287.3 244 62.7
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 1.1e-75 287.3 244 62.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.4e-75 287.0 202 71.8
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.8e-75 286.6 199 72.9
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.8e-75 286.6 254 62.2
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.3e-75 286.2 191 78.0
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 2.3e-75 286.2 237 63.3
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 4.0e-75 285.4 246 61.0
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 5.2e-75 285.0 247 61.9
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 6.8e-75 284.6 250 62.4
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.9e-75 284.3 217 69.6
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 8.9e-75 284.3 248 64.1
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.0e-74 283.1 249 61.8
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.0e-74 283.1 198 74.7
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 7.5e-74 281.2 248 62.5
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 2.2e-73 279.6 210 70.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.9e-73 279.3 246 58.9
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.9e-73 279.3 251 61.4
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 3.7e-73 278.9 251 61.4
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 4.9e-73 278.5 243 60.5
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 4.9e-73 278.5 243 60.5
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 6.4e-73 278.1 218 67.0
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 2.4e-72 276.2 248 61.7
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 4.1e-72 275.4 182 74.2
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 9.2e-72 274.2 192 71.4
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.5e-71 272.3 215 67.9
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.7e-70 270.0 202 67.8
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.3e-70 269.6 245 58.8
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 3.9e-70 268.9 232 61.2
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.9e-70 268.9 236 62.3
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.1e-69 267.3 215 67.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.5e-69 266.9 228 62.3
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 4.3e-69 265.4 204 67.6
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.4e-67 260.4 231 59.7
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 3.4e-66 255.8 217 61.8
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 5.8e-66 255.0 250 56.4
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.7e-63 246.1 164 73.8
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.0e-62 244.2 188 62.8
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 8.6e-62 241.1 197 67.0
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.2e-60 237.3 237 54.4
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 6.4e-49 198.4 121 78.5
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.0e-46 191.0 120 76.7
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 2.5e-45 186.4 203 52.7
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.6e-44 183.7 121 71.9
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.2e-42 177.6 162 54.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-42 177.6 184 52.7
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.8e-41 172.6 111 72.1
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.9e-41 172.2 182 44.5
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.1e-40 171.0 163 57.1
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.3e-36 157.5 182 43.4
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.2e-34 151.0 199 38.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-31 140.6 174 47.1
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 5.5e-24 115.5 176 33.5
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.3e-21 106.3 68 73.5
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-16 91.3 122 45.9
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.5e-16 90.1 145 31.7
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 2.1e-15 87.0 119 51.3
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 3.9e-14 82.8 103 48.5
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.1e-13 81.3 132 33.3
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 4.7e-07 59.3 65 50.8


User provided reference genes

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