Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2334 Papaver somniferum HOM05D003675 ORTHO05D004318 6.3e-117 424.1 210 100.0
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 1.6e-72 276.6 180 80.6
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 1.4e-71 273.5 154 89.6
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.7e-66 256.5 180 71.7
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.1e-65 253.8 152 83.6
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 4.3e-65 251.9 149 85.2
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 4.3e-65 251.9 149 84.6
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 5.6e-65 251.5 149 81.9
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 1.6e-64 250.0 149 83.9
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 4.7e-64 248.4 152 82.9
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 8.1e-64 247.7 172 75.0
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 1.1e-63 247.3 152 80.9
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 1.4e-63 246.9 152 80.9
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 1.4e-63 246.9 152 80.9
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.8e-63 246.5 176 72.7
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.8e-63 246.5 152 80.9
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 1.8e-63 246.5 148 83.1
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 1.8e-63 246.5 152 80.3
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 2.4e-63 246.1 148 84.5
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 4.0e-63 245.4 154 79.2
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 4.0e-63 245.4 149 81.9
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 4.0e-63 245.4 155 81.3
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 4.0e-63 245.4 177 73.4
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 5.2e-63 245.0 149 82.6
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 5.2e-63 245.0 159 78.6
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 6.8e-63 244.6 148 83.1
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 6.8e-63 244.6 150 82.7
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 8.9e-63 244.2 177 71.8
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 8.9e-63 244.2 148 81.8
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 8.9e-63 244.2 152 81.6
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 1.5e-62 243.4 149 81.2
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 1.5e-62 243.4 149 81.2
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.5e-62 243.4 177 74.0
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 2.6e-62 242.7 152 79.6
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 2.6e-62 242.7 149 81.9
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 3.4e-62 242.3 149 81.9
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 3.4e-62 242.3 152 79.6
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 4.4e-62 241.9 151 80.1
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 5.8e-62 241.5 149 81.9
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 5.8e-62 241.5 149 81.9
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 5.8e-62 241.5 149 81.9
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 5.8e-62 241.5 149 81.9
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 5.8e-62 241.5 149 81.9
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 5.8e-62 241.5 149 80.5
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 7.6e-62 241.1 152 78.9
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 7.6e-62 241.1 152 81.6
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 9.9e-62 240.7 169 72.8
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 9.9e-62 240.7 149 82.6
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 9.9e-62 240.7 177 72.3
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 1.7e-61 240.0 149 80.5
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 2.2e-61 239.6 149 81.2
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 2.2e-61 239.6 177 70.6
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 2.2e-61 239.6 152 78.9
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 2.9e-61 239.2 148 80.4
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 4.9e-61 238.4 148 81.8
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 4.9e-61 238.4 148 81.8
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 4.9e-61 238.4 148 81.8
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 6.4e-61 238.0 149 80.5
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 80.5
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 80.5
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 80.5
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 80.5
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 80.5
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 8.4e-61 237.7 152 79.6
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 80.5
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 8.4e-61 237.7 177 70.1
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 8.4e-61 237.7 149 81.2
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 1.4e-60 236.9 152 78.9
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 1.4e-60 236.9 152 78.3
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.4e-60 236.9 152 78.9
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 1.4e-60 236.9 149 77.9
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 4.2e-60 235.3 179 69.8
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 7.1e-60 234.6 152 78.3
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.2e-59 233.8 152 78.3
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 1.2e-59 233.8 152 77.6
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 1.6e-59 233.4 152 77.6
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 1.6e-59 233.4 152 77.0
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 1.6e-59 233.4 152 77.6
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 1.6e-59 233.4 177 68.4
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 2.1e-59 233.0 152 77.0
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 2.1e-59 233.0 152 76.3
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 3.5e-59 232.3 152 77.6
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 4.6e-59 231.9 152 77.6
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 7.8e-59 231.1 148 79.1
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 7.8e-59 231.1 151 78.8
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.0e-58 230.7 148 79.1
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 1.0e-58 230.7 149 76.5
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 1.0e-58 230.7 149 76.5
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 1.7e-58 229.9 148 77.7
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 2.3e-58 229.6 149 77.2
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 6.6e-58 228.0 148 78.4
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 6.6e-58 228.0 148 78.4
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 6.6e-58 228.0 155 74.2
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 6.6e-58 228.0 181 66.9
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 1.1e-57 227.3 149 75.8
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 1.1e-57 227.3 152 76.3
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 1.1e-57 227.3 152 78.9
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 1.5e-57 226.9 152 74.3
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 1.5e-57 226.9 149 73.8
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.9e-57 226.5 141 82.3
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 1.9e-57 226.5 159 74.8
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.5e-57 226.1 148 77.7
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 3.3e-57 225.7 148 77.0
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 4.3e-57 225.3 150 78.7
Lj2A328G58 Lonicera japonica HOM05D003675 ORTHO05D004318 9.6e-57 224.2 161 72.0
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.6e-56 223.4 148 77.0
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.6e-56 223.4 148 77.0
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 1.6e-56 223.4 152 73.0
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 2.1e-56 223.0 154 75.3
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 6.2e-56 221.5 152 70.4
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.1e-55 220.7 162 71.0
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 1.4e-55 220.3 153 74.5
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 3.1e-55 219.2 149 72.5
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 3.1e-55 219.2 153 73.9
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 1.5e-54 216.9 166 67.5
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 1.7e-53 213.4 150 72.0
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.9e-53 212.6 168 67.3
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 2.9e-53 212.6 205 58.5
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 4.9e-53 211.8 129 81.4
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 1.1e-52 210.7 151 72.8
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 2.4e-52 209.5 152 71.7
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 3.2e-52 209.1 154 72.1
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 5.4e-52 208.4 234 53.8
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 1.6e-51 206.8 188 60.6
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.5e-51 205.7 168 65.5
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.5e-51 205.7 168 65.5
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 6.0e-51 204.9 129 80.6
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 6.0e-51 204.9 142 72.5
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.3e-50 203.8 170 62.9
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 5.1e-50 201.8 156 67.9
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 3.3e-49 199.1 151 68.9
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 3.3e-49 199.1 131 74.8
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 5.6e-49 198.4 142 73.2
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 8.1e-48 194.5 170 61.2
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 6.9e-47 191.4 144 66.7
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.0e-46 189.9 114 82.5
SEGI_02924 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 6.4e-45 184.9 129 70.5
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 1.1e-44 184.1 150 66.7
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 4.2e-44 182.2 148 66.9
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 2.1e-35 153.3 107 75.7
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 7.9e-35 151.4 110 67.3
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 2.3e-34 149.8 95 77.9
SHI20673 Sapria himalayana HOM05D003675 ORTHO05D004318 8.4e-29 131.3 123 58.5
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.0e-26 124.4 141 55.3
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 3.3e-25 119.4 235 39.1
HPP92_010709 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.2e-22 110.9 84 67.9
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 7.7e-22 108.2 71 78.9
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-19 99.8 54 88.9
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 2.5e-17 93.2 111 40.5
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.3e-17 92.4 130 36.2
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 7.4e-17 91.7 111 39.6
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.7e-16 89.4 110 40.0
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 1.4e-15 87.4 142 35.2
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 2.4e-15 86.7 116 37.9
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 4.1e-15 85.9 103 40.8
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 4.5e-14 82.4 97 43.3
Nitab4.5_0005814g0050 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.4e-12 77.4 66 68.2
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.5e-12 76.6 149 42.3
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 1.8e-10 70.5 151 37.7
PSO017G3890 Papaver somniferum HOM05D002562 ORTHO05D002808 3.1e-07 59.7 98 37.8


User provided reference genes

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