Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.5e-148 529.6 305 100.0
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 9.7e-143 510.4 306 97.1
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 8.4e-70 268.1 320 50.0
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.9e-67 259.2 320 50.6
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.9e-62 243.0 320 47.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.0e-59 233.0 318 47.2
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.3e-58 229.6 320 45.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 5.3e-56 222.2 320 45.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 9.0e-56 221.5 318 45.6
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.6e-55 219.9 324 44.4
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.7e-54 217.2 356 42.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.9e-54 216.5 320 44.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-53 214.5 318 45.0
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.1e-52 210.3 298 45.3
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 4.6e-52 209.1 320 42.2
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.9e-52 208.4 320 42.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.9e-52 208.4 320 42.8
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.8e-51 207.2 321 43.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.9e-51 206.1 326 42.9
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 8.7e-51 204.9 319 43.6
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.1e-48 198.0 320 40.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.4e-48 197.6 321 40.8
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.4e-48 197.6 323 42.7
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.3e-48 195.7 320 40.3
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.2e-47 194.5 325 41.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.2e-47 194.5 324 42.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.2e-47 194.5 373 37.8
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.5e-47 194.1 326 41.7
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 3.4e-47 193.0 319 40.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.3e-46 191.0 325 40.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-46 190.7 325 41.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.5e-46 188.7 330 40.3
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.6e-44 184.1 317 40.1
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.6e-44 184.1 321 41.1
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.1e-44 183.7 321 40.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.6e-44 182.6 311 40.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.6e-44 182.6 325 39.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.8e-43 180.6 424 34.7
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.8e-43 180.6 252 44.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.3e-43 180.3 327 40.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 6.7e-43 178.7 317 40.4
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 6.7e-43 178.7 254 46.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 8.7e-43 178.3 236 45.3
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.1e-42 177.9 320 38.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.3e-42 176.0 320 40.0
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-41 174.5 431 33.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 6.3e-41 172.2 324 38.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.8e-40 170.6 290 41.0
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.9e-40 168.7 313 42.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.0e-39 167.2 320 37.8
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 3.4e-39 166.4 323 38.7
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.5e-39 166.0 319 37.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 5.9e-39 165.6 313 36.7
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 7.7e-39 165.2 328 36.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.7e-39 165.2 293 40.6
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 7.7e-39 165.2 322 38.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.2e-38 163.7 306 38.9
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.9e-38 163.3 241 44.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.9e-38 163.3 241 44.4
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 5.0e-38 162.5 306 38.6
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 5.0e-38 162.5 300 39.3
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.4e-37 161.0 241 44.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.9e-37 160.6 319 37.0
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 5.5e-37 159.1 323 38.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.1e-36 157.1 293 39.6
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.7e-36 156.8 244 44.3
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.6e-36 156.0 246 42.7
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.6e-36 156.0 297 41.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 6.1e-36 155.6 332 37.3
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 7.9e-36 155.2 322 38.2
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.8e-35 154.1 309 42.7
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.8e-35 151.8 299 40.1
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.5e-34 151.0 304 37.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.6e-34 150.2 380 37.4
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.3e-34 149.8 229 45.4
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 9.7e-34 148.3 319 36.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 9.7e-34 148.3 236 43.2
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.7e-33 147.5 295 37.6
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.2e-33 147.1 240 47.9
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.8e-33 146.7 323 34.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 6.3e-33 145.6 239 40.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.1e-32 144.8 236 41.9
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 2.4e-32 143.7 287 43.9
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.1e-32 143.3 333 36.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 4.1e-32 142.9 322 34.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 5.3e-32 142.5 294 38.1
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 4.5e-31 139.4 316 39.6
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.7e-30 137.5 287 40.1
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.9e-30 136.7 290 36.6
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 3.8e-30 136.3 335 33.4
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.8e-30 136.3 210 39.5
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 5.0e-30 136.0 319 39.8
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.5e-30 135.6 168 45.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-29 134.8 316 33.9
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.4e-29 134.4 291 34.4
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-29 134.4 186 46.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.9e-29 134.0 329 32.8
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 3.2e-29 133.3 262 42.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 5.5e-29 132.5 193 44.6
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 9.4e-29 131.7 201 40.8
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.6e-28 129.8 245 38.8
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 6.1e-28 129.0 264 35.6
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.0e-27 128.3 261 36.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.1e-26 124.8 258 34.5
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.5e-26 124.4 232 38.8
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.4e-26 122.9 293 34.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 7.4e-26 122.1 239 37.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.7e-25 120.9 330 33.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.7e-25 119.8 329 31.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 8.2e-25 118.6 332 31.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.4e-24 117.9 242 35.1
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-24 116.7 330 32.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.1e-24 116.7 330 32.1
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 7.0e-24 115.5 213 37.6
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 2.6e-23 113.6 330 31.5
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 2.9e-22 110.2 330 31.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.1e-21 108.2 199 39.7
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 8.0e-20 102.1 204 38.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.0e-20 102.1 175 40.0
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.8e-19 100.9 141 42.6
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 8.8e-19 98.6 104 49.0
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 8.8e-19 98.6 207 37.2
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 4.4e-18 96.3 290 32.4
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 5.7e-18 95.9 128 44.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.7e-17 94.4 127 42.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 8.2e-17 92.0 207 34.3
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.4e-16 91.3 145 42.1
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.4e-16 91.3 127 42.5
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-16 90.9 290 31.7
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.2e-15 88.2 330 28.8
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-15 88.2 331 29.3
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.7e-15 87.0 335 29.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 7.7e-15 85.5 227 32.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.5e-14 82.0 231 32.5
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 5.5e-13 79.3 333 27.0
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.7e-12 77.0 309 28.5
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 4.7e-12 76.3 84 56.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 8.8e-11 72.0 84 47.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.8e-09 67.0 69 49.3
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 2.4e-08 63.9 96 39.6
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 4.5e-07 59.7 60 48.3
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 7.7e-07 58.9 132 34.1
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.7e-07 58.9 120 37.5
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.7e-06 57.8 101 34.7
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.3e-06 57.4 166 32.5
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 6.5e-06 55.8 113 30.1


User provided reference genes

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