Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1859.3 1024 100.0
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1819.7 1024 97.7
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1417.1 1025 75.5
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1411.0 1030 75.1
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1407.1 1027 75.5
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1341.3 1031 71.6
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1340.5 1020 70.4
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1327.8 1021 69.4
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1315.4 1021 68.9
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1310.0 1026 69.2
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1307.0 1018 69.8
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1303.9 1018 68.6
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1303.1 1029 70.0
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1299.3 1014 68.7
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1298.9 1031 69.7
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1298.5 1030 68.7
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1298.1 1028 68.1
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1297.0 1021 67.8
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1294.6 1034 69.2
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1293.9 1025 68.0
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1292.3 1032 70.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1291.6 1020 67.9
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1290.0 1034 67.2
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1289.2 1022 68.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1285.8 1024 67.6
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1285.8 1032 65.9
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1284.2 1034 69.3
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1283.5 1013 69.9
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1282.7 1053 67.8
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1282.7 1042 66.7
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1281.5 1033 65.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1281.2 1027 66.9
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1281.2 1016 70.4
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1277.7 1022 67.5
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1277.3 1028 67.0
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1276.9 1028 67.0
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1274.6 1022 67.3
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1271.1 1025 66.8
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1270.8 1008 66.5
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1025 68.5
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1028 66.0
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1265.8 1054 67.1
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1265.4 979 69.4
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1263.8 940 70.4
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1262.7 1013 68.9
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1261.5 1037 67.8
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1260.4 946 71.1
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1260.4 1058 65.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1253.8 1025 66.6
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1251.1 1026 65.2
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1250.0 994 67.1
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1245.3 1024 67.2
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1243.8 1018 68.2
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1243.8 1024 66.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1238.8 1023 67.4
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1237.2 1019 64.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1234.6 1027 68.2
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1229.9 1020 66.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1229.9 1044 63.8
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1228.4 1028 67.0
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1228.0 1035 66.2
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1225.3 995 65.1
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 1019 65.0
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1209.5 946 66.5
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1208.7 1002 67.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1206.4 1022 65.9
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1205.7 1085 63.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 1027 62.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1204.5 979 65.9
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1204.5 1044 64.5
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1203.7 1003 64.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1198.0 945 67.8
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1192.2 1000 62.6
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1190.3 1024 61.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1188.3 1026 61.9
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1187.6 1024 61.6
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1187.6 1024 61.6
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1184.1 1011 62.2
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1183.7 1011 61.8
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1183.3 1011 61.8
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1181.4 991 63.0
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1180.2 1044 62.4
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1180.2 1027 62.3
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1179.5 1023 61.3
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1179.5 969 63.9
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1177.2 1022 63.3
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1176.8 1026 61.8
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1176.4 1026 61.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1172.1 1026 60.7
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1157.5 1058 59.5
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1154.4 945 62.5
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1153.7 946 65.5
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1153.3 946 63.7
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1146.3 1043 60.3
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1144.0 973 63.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1135.6 995 61.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1130.5 1054 58.3
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1122.5 948 61.8
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1121.3 926 65.2
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1098.2 789 75.7
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1088.9 795 72.3
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1088.2 789 74.1
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.6e-306 1056.2 852 64.7
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.4e-299 1033.1 1085 54.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 4.8e-295 1018.1 1022 55.1
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 3.1e-294 1015.4 954 55.7
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 6.3e-287 991.1 963 55.5
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.6e-282 976.5 985 53.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.8e-279 964.9 983 51.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.5e-275 952.6 707 73.3
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.3e-273 946.0 1026 51.6
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.2e-264 917.1 942 52.5
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 5.7e-264 914.8 831 59.6
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.4e-256 889.0 753 68.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 7.1e-238 828.2 672 69.5
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.2e-224 784.3 978 46.0
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.4e-214 750.7 626 67.7
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.0e-212 743.0 636 67.3
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.5e-200 702.6 633 64.1
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 3.7e-194 682.9 564 61.0
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.8e-188 664.1 706 49.4
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.8e-188 664.1 977 45.8
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.1e-187 661.4 523 67.7
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.3e-183 647.9 596 57.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.8e-167 593.2 467 69.6
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.9e-159 567.0 592 53.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 8.6e-135 485.7 923 34.6
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.9e-134 484.6 617 45.2
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 3.2e-129 467.2 885 33.6
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.1e-124 450.7 577 48.4
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.9e-118 431.4 400 56.0
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.4e-113 415.2 959 32.1
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 7.3e-110 402.9 319 64.9
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.8e-107 393.3 376 58.5
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.1e-105 389.0 321 67.3
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.4e-105 387.9 384 59.1
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.8e-100 371.7 297 68.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.4e-100 371.3 561 41.9
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.0e-99 368.2 276 69.2
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.0e-99 368.2 277 69.7
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.0e-96 356.7 414 47.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 4.8e-93 347.1 532 43.2
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 3.5e-88 330.9 219 77.6
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 1.8e-87 328.6 573 39.3
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.1e-85 321.6 242 71.5
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 8.2e-85 319.7 277 63.5
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 5.9e-83 313.5 265 61.5
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 6.9e-76 290.0 402 46.0
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.6e-72 278.9 592 34.6
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.7e-71 273.5 299 54.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.8e-68 265.4 189 74.1
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-65 255.0 220 59.1
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.6e-64 251.1 426 41.5
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-61 242.3 268 51.9
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-60 239.2 307 48.2
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.2e-59 236.1 242 57.4
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.7e-51 208.4 225 53.8
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.0e-50 204.1 430 36.7
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 8.5e-50 203.4 135 75.6
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 6.1e-48 197.2 422 36.7
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.0e-47 196.4 154 69.5
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.1e-44 186.4 163 63.8
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.9e-41 175.6 197 51.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.1e-32 145.6 92 75.0
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.8e-32 145.2 179 52.5
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 6.1e-32 144.1 191 45.0
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.4e-31 142.9 236 39.0
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 8.9e-31 140.2 124 68.5
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.7e-27 128.6 168 48.8
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.7e-27 128.6 102 64.7
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 4.6e-27 127.9 133 54.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-25 122.1 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-25 122.1 74 75.7
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 7.3e-25 120.6 122 51.6
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 3.1e-23 115.2 166 42.8
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.4e-20 106.3 81 61.7
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.4e-20 105.5 66 77.3
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.2e-19 103.2 114 46.5
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.3e-18 99.8 173 38.2
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.9e-13 81.3 227 35.7
Actinidia23183 Actinidia chinensis HOM05D003801 ORTHO05D057972 1.2e-06 60.1 54 57.4
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.4e-06 58.5 53 54.7


User provided reference genes

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