Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 4.0e-162 574.7 292 100.0
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 7.3e-156 553.9 296 95.9
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.8e-155 551.2 296 95.3
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.4e-154 548.9 296 94.9
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 3.1e-154 548.5 296 94.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 4.6e-126 454.9 300 77.7
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.3e-125 453.4 301 78.4
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.3e-125 452.6 300 77.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.5e-124 449.9 300 77.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.9e-124 449.5 300 77.7
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.3e-124 448.7 298 77.5
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 4.8e-123 444.9 300 76.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.4e-122 442.6 300 76.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.1e-122 441.8 300 76.0
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.3e-122 441.4 294 77.9
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 6.9e-122 441.0 297 76.1
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.2e-121 440.3 294 77.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.2e-121 440.3 300 75.7
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.6e-121 439.1 302 75.8
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 4.5e-121 438.3 295 76.3
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-120 436.0 294 76.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.8e-120 435.3 300 75.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.4e-119 433.3 298 75.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 4.2e-119 431.8 294 75.9
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.2e-119 431.8 297 77.1
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.6e-118 429.9 292 76.4
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.6e-118 428.7 298 75.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.6e-118 428.3 310 72.6
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-117 426.8 301 74.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.8e-117 426.4 294 77.2
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.3e-117 426.0 295 76.9
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.7e-117 424.5 301 73.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.5e-116 423.3 301 73.4
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.6e-116 422.5 296 76.0
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.3e-116 422.2 291 74.9
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 7.4e-116 421.0 300 72.7
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 7.4e-116 421.0 288 76.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.3e-115 420.2 298 74.8
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.2e-115 419.5 301 73.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.2e-115 419.5 298 74.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 4.8e-115 418.3 292 76.4
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.8e-115 418.3 290 74.5
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.8e-115 418.3 290 74.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.3e-115 417.9 300 75.7
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.1e-114 417.2 290 75.9
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-114 416.8 290 74.1
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 3.1e-114 415.6 300 73.3
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.5e-113 413.3 300 73.7
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-113 412.9 304 71.1
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.0e-113 412.9 300 73.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 5.9e-113 411.4 301 72.4
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.9e-113 411.4 295 73.6
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.3e-112 410.2 301 72.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.1e-111 407.1 272 76.5
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.2e-111 405.6 290 74.5
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.2e-111 405.6 296 73.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.5e-111 404.8 293 73.0
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.2e-110 403.7 300 70.3
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.7e-110 401.7 303 71.6
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.1e-110 401.4 291 72.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.8e-109 399.8 294 70.1
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.0e-109 399.1 291 73.5
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.8e-109 397.5 291 72.5
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.5e-108 396.7 299 70.9
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.0e-108 396.4 294 70.4
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.0e-108 396.4 301 70.1
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 2.6e-108 396.0 301 69.8
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 3.3e-108 395.6 301 70.1
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 7.4e-108 394.4 296 70.3
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 9.7e-108 394.0 345 64.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.8e-107 392.5 295 69.8
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.1e-106 390.6 294 69.7
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.4e-106 390.2 297 70.0
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-106 390.2 289 70.6
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.1e-106 388.7 320 65.6
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 7.0e-106 387.9 265 75.5
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.6e-105 386.7 295 69.5
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.5e-105 385.6 286 72.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 4.5e-105 385.2 268 74.6
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 7.7e-105 384.4 300 68.3
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 7.7e-105 384.4 268 74.6
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.0e-104 384.0 296 69.3
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.0e-104 384.0 286 72.4
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.9e-104 382.5 298 69.1
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.8e-104 382.1 293 68.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.8e-104 382.1 269 74.0
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 5.0e-104 381.7 316 65.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.0e-104 381.7 299 68.9
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 6.5e-104 381.3 265 74.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 8.5e-104 380.9 267 71.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-103 380.6 289 70.6
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.5e-103 380.2 267 71.5
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.5e-103 379.4 292 67.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 4.2e-103 378.6 297 67.0
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.6e-102 376.7 300 66.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 8.0e-102 374.4 290 70.7
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 4.0e-101 372.1 288 69.4
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.7e-101 371.3 253 75.9
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-100 370.5 296 67.6
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 5.7e-100 368.2 292 68.5
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.2e-99 366.3 306 65.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.8e-99 365.9 243 77.8
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 6.3e-99 364.8 243 77.8
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-98 364.0 243 77.4
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-98 364.0 268 71.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.1e-98 362.5 265 70.2
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 9.1e-98 360.9 252 77.4
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.7e-97 359.4 249 74.7
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.5e-95 353.6 276 69.6
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.9e-95 353.2 230 79.6
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 5.5e-95 351.7 245 75.9
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 9.4e-95 350.9 215 81.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.7e-94 349.4 312 61.9
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.3e-93 346.3 247 74.5
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.3e-93 346.3 254 71.7
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.0e-93 345.9 243 74.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.0e-93 345.5 285 64.6
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 8.8e-93 344.4 276 68.1
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-86 323.9 293 61.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.4e-84 315.8 292 60.6
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-82 310.8 212 76.4
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.6e-81 307.0 224 74.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 3.5e-81 305.8 298 60.7
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.0e-80 304.3 178 86.5
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.8e-77 293.5 301 53.5
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 5.2e-77 292.0 246 64.6
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.2e-76 290.8 255 61.2
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-75 286.6 234 69.2
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.1e-74 284.3 314 49.7
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 4.1e-74 282.3 299 52.5
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.1e-74 282.3 179 80.4
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.6e-73 280.4 289 54.7
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 4.6e-73 278.9 215 71.2
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.3e-72 276.6 253 61.3
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.9e-69 264.6 278 56.1
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.7e-67 260.4 177 71.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.2e-66 256.1 255 57.6
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.8e-65 251.5 214 60.3
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 7.8e-65 251.5 174 71.3
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.8e-60 235.3 163 76.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.2e-58 228.0 139 84.9
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-55 221.1 204 60.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-54 217.6 256 55.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.9e-48 196.1 173 63.0
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 9.6e-47 191.4 219 44.7
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 5.2e-45 185.7 141 67.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.6e-44 181.8 155 63.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.0e-37 159.5 118 72.9
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.2e-34 149.4 109 69.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.9e-31 140.6 82 85.4
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.7e-27 127.5 79 77.2
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 7.9e-25 118.6 64 87.5
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.3e-16 90.5 108 52.8
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.0e-16 90.1 89 53.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.3e-15 86.7 66 72.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-14 84.7 88 53.4
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.5e-12 77.8 52 73.1
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-08 65.1 48 68.8


User provided reference genes

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