Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 7.0e-117 424.1 233 100.0
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.9e-115 418.7 233 98.7
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.4e-64 250.4 216 65.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.6e-63 246.1 217 63.1
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.5e-63 245.4 221 65.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.6e-63 244.6 218 62.4
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.9e-62 241.9 215 62.3
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.4e-61 240.4 223 69.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-61 240.0 214 68.7
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.9e-61 240.0 214 68.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.4e-61 239.6 219 68.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 4.2e-61 238.8 216 67.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 4.2e-61 238.8 215 68.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 7.1e-61 238.0 214 70.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.3e-61 237.7 214 68.2
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.2e-60 237.3 209 70.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-60 236.9 224 64.7
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.7e-60 236.1 224 64.3
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 4.6e-60 235.3 214 59.3
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.6e-60 235.3 218 62.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.6e-60 235.3 218 62.4
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.6e-60 235.3 214 62.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 6.0e-60 235.0 214 65.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.0e-59 234.2 217 61.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.3e-59 233.8 218 60.6
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.8e-59 233.4 226 63.7
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.3e-59 233.0 213 63.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.9e-59 232.3 213 63.4
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.9e-59 232.3 213 63.4
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.1e-59 231.9 213 61.5
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 6.7e-59 231.5 214 59.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 6.7e-59 231.5 217 59.0
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 6.7e-59 231.5 214 67.8
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.9e-58 229.9 215 61.9
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 5.6e-58 228.4 214 67.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.4e-58 228.0 232 65.1
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.4e-58 228.0 225 58.7
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.3e-57 227.3 214 58.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.3e-57 227.3 216 66.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.6e-57 226.9 213 65.7
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.6e-57 226.9 221 64.3
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 6.2e-57 224.9 214 65.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.2e-57 224.9 215 64.2
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 8.1e-57 224.6 216 60.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.1e-56 224.2 214 66.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.4e-56 223.8 217 62.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.4e-56 223.0 206 64.1
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 2.4e-56 223.0 214 58.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.4e-56 223.0 217 62.7
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.1e-56 222.6 217 64.1
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 5.3e-56 221.9 221 62.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.3e-56 221.9 220 59.5
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.9e-56 221.5 199 60.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.9e-56 221.5 213 59.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 6.9e-56 221.5 214 57.5
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.2e-55 220.7 220 64.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.0e-55 219.9 214 62.6
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.0e-55 219.9 218 56.0
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 4.5e-55 218.8 226 57.5
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 4.5e-55 218.8 224 62.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 5.8e-55 218.4 222 62.6
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.8e-55 218.4 224 62.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 9.9e-55 217.6 220 60.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.3e-54 217.2 216 56.0
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.7e-54 216.9 220 58.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.2e-54 216.5 230 61.7
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.9e-54 216.1 229 60.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.9e-54 215.3 221 63.3
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.9e-54 215.3 222 56.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.4e-54 214.9 207 58.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 6.4e-54 214.9 214 59.3
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.4e-54 214.5 220 58.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.9e-53 213.4 218 66.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 3.2e-53 212.6 213 60.1
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 4.2e-53 212.2 216 54.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 4.2e-53 212.2 216 60.6
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 7.1e-53 211.5 226 60.6
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 9.3e-53 211.1 213 61.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 9.3e-53 211.1 211 60.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.6e-52 210.3 213 61.0
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.1e-52 209.9 225 60.0
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.7e-52 209.5 217 55.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.7e-52 209.5 230 60.4
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 7.9e-52 208.0 221 54.8
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-51 207.6 216 59.3
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.0e-51 207.6 250 56.0
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.3e-51 207.2 223 57.0
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.1e-51 205.3 209 54.1
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.1e-50 204.1 215 54.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.5e-50 203.8 243 57.6
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 7.4e-50 201.4 221 55.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.6e-50 201.1 208 58.7
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.6e-49 200.3 212 59.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.1e-49 199.9 218 61.0
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.8e-49 199.5 218 55.5
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 3.7e-49 199.1 216 56.0
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.7e-49 199.1 201 61.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.0e-48 195.7 161 62.1
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.2e-47 194.1 231 51.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.2e-47 194.1 172 60.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.5e-47 193.7 221 56.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.0e-47 193.4 214 54.2
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.8e-47 191.8 156 64.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.3e-46 190.7 229 57.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.2e-46 189.9 218 51.4
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.8e-46 189.1 223 57.0
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.5e-46 188.3 221 51.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.4e-45 187.2 211 55.5
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.6e-44 183.7 227 51.5
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-44 183.7 206 51.9
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.3e-43 180.6 206 56.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.9e-43 179.1 157 62.4
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.2e-41 173.3 196 58.2
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 4.5e-39 165.6 224 53.1
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.9e-38 162.9 212 47.2
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.5e-38 161.8 191 52.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.2e-36 157.5 191 49.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 7.9e-36 154.8 223 48.0
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.0e-35 152.9 168 56.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.7e-35 151.8 126 60.3
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 7.4e-34 148.3 159 49.1
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.3e-33 147.5 237 38.4
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.7e-33 146.0 208 44.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.3e-32 142.1 221 39.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 5.9e-31 138.7 135 57.8
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.0e-30 137.9 145 53.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-30 137.5 162 47.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 8.5e-30 134.8 216 38.9
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 7.2e-29 131.7 202 41.1
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 9.4e-29 131.3 109 59.6
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.7e-28 129.0 124 62.1
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 6.1e-28 128.6 126 61.1
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.0e-27 126.3 124 61.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 6.7e-27 125.2 145 45.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 8.8e-27 124.8 158 42.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-25 120.9 138 45.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.1e-24 115.9 112 50.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.9e-24 115.2 201 40.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.9e-23 112.1 121 55.4
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.0e-22 111.3 88 53.4
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.8e-22 109.4 108 55.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.1e-20 103.6 87 51.7
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.0e-19 101.3 146 37.7
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.9e-19 99.4 210 32.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.8e-19 98.2 131 38.2
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.8e-19 98.2 129 41.1
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-18 97.1 85 50.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.6e-18 96.7 84 51.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.4e-16 90.9 115 52.2
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 7.0e-16 88.6 205 36.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 4.5e-15 85.9 110 42.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.3e-14 84.3 114 50.9
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.8e-14 82.8 116 42.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.6e-10 70.1 83 49.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-10 69.7 99 48.5
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 3.5e-07 59.7 85 44.7
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 6.5e-06 55.5 77 44.2


User provided reference genes

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