Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1731.5 871 100.0
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1700.3 871 98.2
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1229.5 869 71.5
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 848 74.1
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 865 69.7
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1192.9 868 70.6
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1186.8 839 71.2
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1174.5 866 69.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1174.5 868 69.9
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1173.3 855 70.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1172.5 868 68.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 835 71.4
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1168.7 866 68.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1164.8 864 68.2
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1160.6 856 69.6
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1157.1 865 67.9
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1153.3 876 68.9
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1152.1 876 68.9
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1148.7 876 68.6
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1146.7 860 68.7
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1143.3 858 68.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1143.3 859 68.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1139.8 867 67.7
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1138.3 904 66.8
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1134.8 840 69.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1134.8 867 66.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1133.6 866 67.2
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1130.5 836 68.7
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1128.6 861 69.0
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1128.2 818 70.7
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1124.8 837 69.1
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1124.8 856 68.2
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1124.8 836 68.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1123.2 835 68.3
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1122.8 836 68.2
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1119.8 870 66.8
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1119.4 859 67.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1118.6 854 66.3
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1117.1 837 67.1
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 859 67.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 883 65.9
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1112.1 864 66.2
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1111.3 857 65.7
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1110.1 854 68.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 854 66.2
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 848 66.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1107.0 869 65.9
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1107.0 848 66.9
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1107.0 870 66.3
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1107.0 870 66.2
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1102.4 876 66.7
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1100.9 969 61.3
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 866 66.3
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1097.4 861 65.4
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1093.6 836 66.0
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1093.6 852 66.2
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1093.6 841 66.2
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 729 74.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1088.9 855 64.9
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 868 64.6
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 869 65.0
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 842 66.4
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 772 71.6
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 840 65.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1083.9 854 66.0
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 840 66.5
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 856 65.1
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1076.6 841 65.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1075.8 835 65.5
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1075.5 768 71.6
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 6.0e-312 1074.3 898 63.6
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 2.4e-311 1072.0 760 72.4
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.6e-310 1068.5 835 64.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 2.5e-308 1062.0 854 64.5
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 6.1e-307 1057.4 867 62.6
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.1e-305 1053.1 825 66.8
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.5e-305 1052.7 859 63.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.6e-305 1052.0 871 63.7
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 1.7e-304 1049.3 922 61.2
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.1e-303 1046.6 962 60.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.8e-303 1045.8 881 63.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.4e-303 1045.4 835 63.7
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 9.1e-303 1043.5 851 63.9
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 4.5e-302 1041.2 835 64.9
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.0e-301 1040.0 943 60.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.9e-301 1038.5 834 63.1
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.5e-300 1036.2 857 62.8
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.5e-300 1036.2 857 62.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 9.4e-300 1033.5 765 69.0
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 2.1e-299 1032.3 944 59.0
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 3.6e-299 1031.6 836 63.8
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 3.0e-298 1028.5 836 63.6
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.0e-298 1028.5 837 63.3
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.7e-296 1022.7 836 63.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 2.2e-296 1022.3 838 63.0
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 2.2e-296 1022.3 838 63.0
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.2e-294 1016.5 834 61.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 7.7e-294 1013.8 832 63.6
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 7.2e-292 1007.3 866 59.7
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 4.7e-291 1004.6 995 56.1
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.7e-289 997.7 900 60.3
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 7.7e-286 987.3 741 68.6
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 4.7e-283 978.0 722 68.4
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 3.7e-280 968.4 708 69.1
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.0e-278 962.6 844 59.6
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 5.9e-278 961.1 739 65.9
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.1e-275 952.6 870 58.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.2e-270 936.8 791 61.3
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 2.7e-270 935.6 720 66.0
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.4e-265 918.7 851 58.2
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.4e-263 913.3 850 58.1
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.1e-255 884.4 746 62.7
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.0e-249 866.3 706 65.4
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 8.7e-245 850.9 673 64.8
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 3.8e-232 808.9 536 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 6.0e-230 801.6 851 51.5
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 5.3e-226 788.5 773 57.3
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.0e-224 784.3 867 52.5
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.2e-206 724.2 541 68.0
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.3e-204 715.7 856 47.7
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.4e-204 714.9 868 47.9
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 7.9e-198 694.9 868 45.4
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.3e-192 677.6 459 74.5
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.0e-168 598.2 457 66.7
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.5e-167 594.3 763 46.8
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.0e-165 588.2 456 68.6
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 2.7e-161 573.5 540 57.8
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.2e-154 550.1 813 42.3
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.7e-152 544.3 467 60.2
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.4e-147 525.8 491 59.9
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-146 524.6 471 59.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.5e-145 520.0 394 66.8
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.2e-140 505.0 401 64.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 5.4e-138 496.1 738 43.2
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 5.6e-127 459.5 460 55.0
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-116 424.9 366 62.0
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.5e-111 408.3 303 66.7
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.9e-111 407.9 383 54.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.8e-110 404.1 352 62.2
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 3.2e-98 364.0 307 60.3
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 5.1e-96 356.7 319 57.1
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 7.2e-90 336.3 331 55.0
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.7e-89 334.3 287 59.6
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.9e-74 285.0 199 70.9
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 6.7e-72 276.6 246 57.7
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 5.7e-63 246.9 187 65.8
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.8e-61 241.9 253 53.0
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.2e-54 218.4 173 60.7
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 7.7e-52 209.9 158 70.3
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 7.5e-47 193.4 530 29.6
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.4e-45 188.3 130 71.5
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 4.7e-41 174.1 270 43.7
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.0e-37 160.2 169 54.4
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 3.4e-31 141.4 72 97.2
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.5e-31 140.2 128 62.5
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 8.6e-27 126.7 125 52.8
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.2e-24 117.5 110 58.2
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 2.2e-22 112.1 120 52.5
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 3.3e-18 98.2 74 62.2
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.2e-15 89.7 56 71.4
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-12 79.7 97 48.5
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.1e-11 74.3 79 54.4
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.1e-08 66.6 79 49.4
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 9.9e-07 60.1 52 53.8
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 8.4e-06 57.0 35 71.4
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 8.4e-06 57.0 35 71.4
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 8.4e-06 57.0 35 71.4


User provided reference genes

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