Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.7e-111 406.0 198 100.0
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 2.3e-92 342.4 171 95.9
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 2.3e-92 342.4 171 95.9
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.6e-85 319.7 175 83.4
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 7.3e-83 310.8 171 83.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 7.3e-83 310.8 176 80.7
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 3.6e-82 308.5 177 83.1
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 8.1e-82 307.4 176 80.1
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.4e-81 306.6 182 77.5
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 3.1e-81 305.4 173 79.8
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.1e-81 305.4 173 81.5
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 9.0e-81 303.9 171 81.9
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.5e-80 303.1 173 80.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 2.0e-80 302.8 173 80.3
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 2.0e-80 302.8 173 79.2
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.6e-80 302.4 170 81.2
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 3.4e-80 302.0 170 81.2
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 5.8e-80 301.2 173 79.2
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.3e-79 300.1 172 80.2
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.7e-79 299.7 172 77.3
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 2.2e-79 299.3 173 80.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 3.8e-79 298.5 177 76.3
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 4.9e-79 298.1 173 78.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.9e-79 298.1 176 77.8
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 6.4e-79 297.7 170 81.2
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 8.4e-79 297.4 170 80.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.1e-78 297.0 171 76.6
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.1e-78 297.0 173 79.2
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.9e-78 296.2 177 76.3
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.9e-78 296.2 170 80.0
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 3.2e-78 295.4 171 79.5
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 5.4e-78 294.7 171 77.2
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 5.4e-78 294.7 171 76.0
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 5.4e-78 294.7 178 75.3
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 7.1e-78 294.3 172 79.1
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 7.1e-78 294.3 173 75.7
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 7.1e-78 294.3 171 77.2
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.1e-78 294.3 171 77.2
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 9.3e-78 293.9 168 79.2
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 9.3e-78 293.9 170 77.6
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.2e-77 293.5 171 76.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.2e-77 293.5 182 76.9
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.5e-77 292.0 173 75.7
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 3.5e-77 292.0 171 77.2
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.6e-77 291.6 171 77.2
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 6.0e-77 291.2 171 76.0
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 7.9e-77 290.8 168 78.6
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-76 290.4 171 76.0
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.0e-76 290.4 172 76.2
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.3e-76 289.3 166 78.3
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.3e-76 289.3 169 74.6
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 3.0e-76 288.9 167 75.4
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.0e-76 288.9 173 75.1
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 3.9e-76 288.5 169 79.3
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.1e-76 288.1 169 76.9
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 5.1e-76 288.1 169 78.1
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 6.6e-76 287.7 167 76.6
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 6.6e-76 287.7 180 73.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 8.7e-76 287.3 173 78.0
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.1e-75 287.0 171 76.0
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.1e-75 287.0 167 81.4
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.9e-75 286.2 172 75.0
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 2.5e-75 285.8 175 73.7
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 3.3e-75 285.4 173 77.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 4.3e-75 285.0 171 72.5
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 4.3e-75 285.0 166 76.5
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 4.3e-75 285.0 169 76.3
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 5.6e-75 284.6 171 73.1
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 5.6e-75 284.6 172 73.8
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 5.6e-75 284.6 168 76.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 7.3e-75 284.3 171 72.5
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.3e-74 283.5 174 74.1
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.6e-74 283.1 167 77.2
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.6e-74 283.1 166 75.9
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.6e-74 283.1 166 76.5
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.6e-74 283.1 166 76.5
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-74 282.7 169 75.7
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 2.8e-74 282.3 173 77.5
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 2.8e-74 282.3 171 76.0
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.6e-74 282.0 167 77.8
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 3.6e-74 282.0 168 75.6
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 3.6e-74 282.0 168 75.0
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 4.8e-74 281.6 171 72.5
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 6.2e-74 281.2 208 65.4
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.8e-73 279.6 168 73.8
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.8e-73 279.6 171 74.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 2.4e-73 279.3 171 73.7
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 5.3e-73 278.1 166 74.1
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 6.9e-73 277.7 170 76.5
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 6.9e-73 277.7 171 74.9
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 6.9e-73 277.7 166 74.7
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 6.9e-73 277.7 166 75.3
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.2e-72 276.9 163 77.3
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.5e-72 276.6 166 74.7
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.0e-72 276.2 171 73.7
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.4e-72 275.4 168 73.8
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 4.5e-72 275.0 166 74.7
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 4.5e-72 275.0 168 75.0
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 5.8e-72 274.6 193 67.9
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.7e-71 273.1 171 72.5
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 2.2e-71 272.7 168 71.4
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.2e-71 272.7 168 71.4
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 2.2e-71 272.7 164 75.6
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 3.8e-71 271.9 168 73.2
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 4.9e-71 271.6 168 72.0
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 4.9e-71 271.6 168 72.0
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 8.4e-71 270.8 178 73.6
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 5.5e-70 268.1 159 77.4
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 5.5e-70 268.1 231 57.6
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 1.2e-69 266.9 168 71.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.2e-69 266.9 158 77.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.2e-69 266.9 169 71.6
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.2e-69 266.9 158 77.2
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.2e-69 266.9 154 79.2
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-69 266.2 168 72.6
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 6.0e-69 264.6 158 77.2
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.3e-68 263.5 168 72.0
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.3e-68 263.5 170 71.2
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.8e-68 263.1 158 76.6
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 2.5e-67 259.2 176 65.9
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 4.3e-67 258.5 168 67.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.8e-66 255.8 181 67.4
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 2.8e-66 255.8 174 67.2
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.0e-65 251.9 170 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.2e-64 250.4 164 67.7
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 7.6e-64 247.7 170 65.3
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 6.0e-61 238.0 171 68.4
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 3.0e-60 235.7 169 65.1
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 5.1e-60 235.0 162 66.7
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.1e-59 233.8 176 61.4
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 5.7e-59 231.5 168 63.1
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 3.7e-58 228.8 170 60.6
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.3e-55 220.3 169 59.2
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 8.4e-55 217.6 167 55.7
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.3e-51 205.3 113 79.6
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 5.3e-49 198.4 167 53.3
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 6.9e-49 198.0 111 81.1
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 9.0e-49 197.6 117 79.5
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 4.2e-46 188.7 176 50.0
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 7.2e-46 188.0 114 74.6
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 4.6e-45 185.3 122 68.9
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 9.7e-43 177.6 104 78.8
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.7e-42 176.8 104 77.9
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-41 174.1 103 77.7
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 6.9e-41 171.4 167 53.3
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.5e-38 161.8 109 66.1
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 2.1e-37 159.8 108 66.7
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 2.1e-37 159.8 108 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.7e-37 159.5 104 70.2
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 4.7e-37 158.7 178 53.4
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 3.0e-36 156.0 170 48.8
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.7e-35 151.8 84 81.0
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.0e-27 126.7 180 35.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 8.2e-26 121.3 72 72.2
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 2.7e-24 116.3 137 48.9
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 3.2e-22 109.4 123 48.0
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.4e-19 99.4 63 66.7
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 6.3e-18 95.1 61 73.8
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 3.1e-17 92.8 179 30.2
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 8.5e-15 84.7 79 51.9
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.2e-13 80.9 62 54.8
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 6.1e-13 78.6 62 56.5
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 7.5e-11 71.6 61 55.7
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.3e-10 70.9 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 9.2e-09 64.7 48 66.7


User provided reference genes

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