Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 4.2e-95 351.3 170 100.0
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.1e-62 242.7 161 73.3
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.1e-62 242.7 161 73.3
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.5e-55 219.9 157 68.8
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.5e-55 219.2 166 65.1
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.5e-55 219.2 166 63.3
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 3.6e-54 215.3 155 65.8
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.7e-54 214.9 163 64.4
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 6.1e-54 214.5 165 62.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.0e-53 213.8 164 64.0
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 3.0e-53 212.2 159 64.2
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 5.2e-53 211.5 165 61.2
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 6.8e-53 211.1 181 59.1
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 6.8e-53 211.1 153 67.3
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 8.9e-53 210.7 156 65.4
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 8.9e-53 210.7 185 58.4
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.5e-52 209.9 159 62.9
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.0e-52 209.5 167 61.1
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.0e-52 209.5 165 62.4
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.5e-52 207.6 181 58.6
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 9.8e-52 207.2 162 63.0
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 9.8e-52 207.2 157 64.3
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 9.8e-52 207.2 191 56.0
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.9e-51 205.7 165 62.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.9e-51 205.7 157 64.3
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.7e-51 205.3 163 61.3
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.9e-51 204.9 158 62.7
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.4e-51 204.5 157 64.3
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.4e-50 203.4 159 59.7
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.8e-50 203.0 165 61.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.8e-50 203.0 165 61.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.4e-50 202.6 155 63.9
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.4e-50 202.6 173 59.5
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 3.2e-50 202.2 163 60.1
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 5.4e-50 201.4 155 63.2
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.0e-50 201.1 155 61.9
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 7.0e-50 201.1 174 60.3
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 7.0e-50 201.1 165 60.6
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 9.2e-50 200.7 154 63.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 2.3e-48 196.1 178 56.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.9e-48 195.3 171 59.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 3.9e-48 195.3 159 61.0
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.0e-48 194.9 185 55.7
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-47 193.7 161 61.5
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.5e-47 193.4 179 57.0
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.9e-47 193.0 164 59.1
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 2.5e-47 192.6 166 59.0
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.5e-47 192.6 180 56.1
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 3.3e-47 192.2 169 58.6
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.3e-47 191.8 161 60.2
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.3e-47 191.8 158 60.8
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 5.6e-47 191.4 184 53.8
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 9.5e-47 190.7 176 56.2
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 9.5e-47 190.7 161 60.2
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.1e-46 189.5 156 62.8
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.8e-46 189.1 157 61.1
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.8e-46 189.1 175 56.0
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.4e-45 186.8 156 62.8
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.8e-45 186.4 193 52.8
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.1e-45 185.7 165 57.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 5.2e-45 184.9 172 55.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 8.9e-45 184.1 186 53.2
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.2e-44 183.7 157 60.5
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.5e-44 183.3 159 57.2
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.6e-44 182.6 180 55.6
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 2.6e-44 182.6 158 55.1
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.6e-44 182.6 173 56.1
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.4e-44 182.2 155 58.7
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.4e-44 182.2 206 49.0
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.4e-44 182.2 157 60.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.3e-43 180.3 161 56.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.7e-43 179.9 164 57.3
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 8.3e-43 177.6 157 58.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 2.4e-42 176.0 166 56.6
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 4.1e-42 175.3 155 57.4
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.7e-41 172.6 158 57.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 4.6e-41 171.8 164 50.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 4.6e-41 171.8 154 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 6.0e-41 171.4 161 56.5
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 8.6e-40 167.5 160 53.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-39 167.2 123 69.1
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-39 167.2 172 52.9
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.5e-39 166.8 174 52.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.9e-39 166.4 159 55.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.3e-39 165.2 155 56.1
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.3e-39 165.2 155 51.6
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 7.3e-39 164.5 124 67.7
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.2e-38 163.7 206 45.6
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.6e-38 163.3 116 70.7
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.1e-38 162.9 155 54.2
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.6e-38 162.2 225 43.1
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.6e-38 162.2 156 53.2
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.7e-38 161.8 128 62.5
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.2e-38 161.4 176 48.3
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.1e-37 160.6 116 69.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.4e-37 160.2 123 61.0
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.3e-37 159.5 120 66.7
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.1e-37 159.1 123 64.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 3.1e-37 159.1 157 54.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 4.0e-37 158.7 123 63.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 8.9e-37 157.5 117 68.4
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.9e-37 157.5 166 49.4
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.5e-36 156.8 159 52.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.6e-36 156.0 156 53.8
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 5.8e-36 154.8 116 66.4
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 7.5e-36 154.5 166 50.0
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.3e-35 153.7 155 52.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.2e-35 152.9 117 65.0
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 2.9e-35 152.5 116 64.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.9e-35 152.5 146 52.1
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.9e-35 152.5 113 67.3
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.9e-35 151.8 116 67.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 6.4e-35 151.4 164 48.2
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.4e-34 150.2 133 60.2
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 1.9e-34 149.8 116 65.5
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.1e-34 147.9 116 62.1
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 9.2e-34 147.5 114 64.9
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 4.6e-33 145.2 143 52.4
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.0e-32 144.1 165 48.5
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 5.1e-32 141.7 116 61.2
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.2e-30 137.1 163 48.5
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.2e-30 137.1 135 51.9
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.2e-30 137.1 136 51.5
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.8e-29 133.3 157 47.8
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.5e-28 130.2 138 52.2
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.1e-26 124.0 100 60.0
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 7.8e-25 117.9 146 47.9
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.0e-24 117.5 115 53.9
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.9e-24 115.5 165 42.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.5e-23 112.8 161 41.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.3e-23 112.1 81 64.2
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 5.6e-23 111.7 123 49.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 5.2e-21 105.1 163 39.9
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.6e-20 102.8 83 54.2
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 2.9e-19 99.4 105 49.5
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.8e-19 99.0 87 56.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.9e-18 96.7 74 66.2
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 3.2e-18 95.9 155 39.4
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 7.1e-18 94.7 73 65.8
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-17 92.8 74 63.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.3e-15 85.5 74 58.1
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.6e-14 82.4 75 54.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.4e-13 80.5 120 40.8
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.4e-13 79.7 120 41.7
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 5.3e-13 78.6 152 36.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 9.9e-12 74.3 46 67.4
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.9e-10 70.1 66 56.1
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.4e-10 69.7 55 58.2
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 3.2e-10 69.3 39 74.4
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 6.0e-09 65.1 44 65.9
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.8e-08 63.5 45 57.8
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.9e-08 62.4 58 48.3
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 6.7e-08 61.6 49 57.1
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 8.7e-08 61.2 72 45.8
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.1e-07 60.8 51 58.8
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.3e-07 59.3 40 60.0
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.6e-06 57.0 35 68.6
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 1.6e-06 57.0 38 60.5
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 4.8e-06 55.5 36 66.7
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 6.2e-06 55.1 42 52.4
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 6.2e-06 55.1 39 56.4


User provided reference genes

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