Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 0.0e+00 1301.2 874 100.0
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 0.0e+00 1217.6 874 94.4
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.7e-211 740.3 880 62.3
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 2.5e-191 673.3 809 61.2
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 1.4e-178 630.9 800 59.0
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 9.2e-178 628.2 797 59.8
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 8.6e-176 621.7 815 59.0
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.8e-174 616.7 819 58.1
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 2.6e-172 610.1 801 57.6
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 9.8e-172 608.2 800 57.5
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.0e-168 598.2 874 54.2
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 3.4e-164 583.2 884 60.4
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.4e-162 577.8 813 55.7
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 7.8e-161 572.0 877 54.8
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 1.0e-160 571.6 810 55.7
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 2.3e-160 570.5 809 55.5
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 2.5e-159 567.0 868 55.1
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 3.3e-159 566.6 885 53.3
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 1.6e-158 564.3 868 54.5
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 3.6e-158 563.1 802 55.4
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 4.7e-158 562.8 869 53.0
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 4.7e-158 562.8 868 58.5
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 4.7e-158 562.8 881 51.9
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 8.9e-157 558.5 816 55.8
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.2e-156 558.1 812 47.9
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 2.0e-156 557.4 792 62.1
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 3.4e-156 556.6 890 49.8
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.7e-155 554.3 872 52.5
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.4e-154 551.2 822 54.6
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 7.1e-154 548.9 809 54.0
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.2e-153 548.1 873 51.1
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 6.0e-153 545.8 794 53.8
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 2.3e-152 543.9 689 59.7
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.0e-152 543.5 797 61.5
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 3.9e-152 543.1 708 60.0
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 5.6e-151 539.3 877 50.3
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.6e-151 539.3 692 60.3
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 9.5e-151 538.5 796 54.3
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 9.5e-151 538.5 796 54.3
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 1.6e-150 537.7 684 61.1
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 2.1e-150 537.3 795 53.6
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 2.8e-150 537.0 797 53.6
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 2.8e-150 537.0 797 53.6
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 1.8e-149 534.3 801 53.9
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 2.4e-149 533.9 800 54.1
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 3.1e-149 533.5 805 47.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 8.9e-149 531.9 808 53.7
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.5e-148 531.2 813 59.4
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 3.4e-148 530.0 809 52.5
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 4.4e-148 529.6 808 49.0
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 1.3e-147 528.1 798 54.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 1.1e-146 525.0 880 50.0
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.9e-146 524.2 826 46.9
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 4.1e-146 523.1 801 54.3
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 4.1e-146 523.1 872 51.7
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.2e-145 521.5 798 53.3
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.1e-145 520.8 812 52.8
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 4.6e-145 519.6 798 55.4
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 4.6e-145 519.6 876 52.6
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 4.6e-145 519.6 900 50.9
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 6.0e-145 519.2 900 50.9
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 2.3e-144 517.3 691 58.0
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 5.1e-144 516.2 726 48.8
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 5.1e-144 516.2 726 48.8
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 6.6e-144 515.8 812 49.3
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.9e-143 514.2 690 59.1
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.9e-143 514.2 690 58.7
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 3.3e-143 513.5 813 52.5
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 5.6e-143 512.7 856 46.8
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 2.8e-142 510.4 872 47.1
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 4.0e-141 506.5 687 58.8
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 5.2e-141 506.1 697 57.0
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 7.6e-140 502.3 829 44.3
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 7.6e-140 502.3 803 52.9
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 2.2e-139 500.7 687 55.9
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 6.4e-139 499.2 691 57.6
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 3.2e-138 496.9 689 56.3
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 4.2e-138 496.5 815 52.5
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 3.9e-136 490.0 780 54.4
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.8e-133 481.1 819 49.8
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.7e-131 474.6 808 42.5
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 2.8e-126 457.2 689 54.4
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 3.8e-123 446.8 792 50.5
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 5.5e-122 443.0 735 51.8
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.7e-121 440.7 805 37.5
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 7.9e-121 439.1 605 60.8
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 6.2e-118 429.5 817 41.6
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 2.2e-110 404.4 826 45.8
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 9.4e-98 362.5 581 49.9
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 2.3e-88 331.3 541 57.3
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 5.5e-82 310.1 675 33.8
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 6.3e-78 296.6 409 56.0
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.5e-76 290.8 808 41.6
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 1.6e-73 282.0 549 53.9
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 5.2e-72 276.9 807 43.2
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.3e-67 262.3 839 41.1
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.7e-67 261.9 420 59.3
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 1.2e-44 186.0 241 47.3
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 1.9e-42 178.7 388 38.7
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 4.7e-41 174.1 332 48.2
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 2.9e-38 164.9 228 40.4
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 3.7e-38 164.5 242 42.1
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 5.1e-19 100.9 181 37.6
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 9.0e-16 90.1 105 44.8
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 4.2e-13 81.3 159 34.0
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 4.3e-10 71.2 76 50.0
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 8.1e-09 67.0 72 48.6
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 2.4e-08 65.5 175 52.0
Cc06_g22840 Coffea canephora HOM05D000001 ORTHO05D000003 5.3e-08 64.3 221 23.1
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 6.9e-08 63.9 168 28.6
BcaB05g21499 Brassica carinata HOM05D007251 ORTHO05D009266 2.0e-07 62.4 168 28.6
A02p00600 Brassica napus HOM05D007251 ORTHO05D009266 2.0e-07 62.4 168 28.6
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 3.4e-07 61.6 134 26.9
arahy.Tifrunner.gnm1.ann1.X62M7H Arachis hypogaea HOM05D004127 ORTHO05D005119 3.4e-07 61.6 134 26.9
Aa31LG5G14090 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.5e-07 61.2 363 20.9
BraA02t05043Z Brassica rapa HOM05D007251 ORTHO05D009266 4.5e-07 61.2 168 28.0
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 1.0e-06 60.1 168 28.6
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 1.3e-06 59.7 168 28.6
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 1.7e-06 59.3 194 26.3
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 1.7e-06 59.3 124 31.5
Actinidia24327 Actinidia chinensis HOM05D000001 ORTHO05D009986 2.2e-06 58.9 163 28.2
AagrBONN_evm.TU.Sc2ySwM_228.1164__1168 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 58.9 215 24.2
BolC2t06419H Brassica oleracea HOM05D007251 ORTHO05D009266 2.2e-06 58.9 168 28.0
CSS0049067 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009986 2.2e-06 58.9 224 25.0
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 2.2e-06 58.9 149 26.2
AagrBONN_evm.TU.Sc2ySwM_117.1329 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.9e-06 58.5 174 22.4
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 2.9e-06 58.5 155 26.5
Nn8g40977 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.8e-06 58.2 175 25.7
BcaC03g13325 Brassica carinata HOM05D007251 ORTHO05D009266 8.4e-06 57.0 168 28.0
C02p04590 Brassica napus HOM05D007251 ORTHO05D009266 8.4e-06 57.0 168 28.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 8.4e-06 57.0 171 27.5
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 8.4e-06 57.0 149 26.2


User provided reference genes

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