Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 0.0e+00 1139.4 603 100.0
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 0.0e+00 1088.6 603 94.5
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.8e-226 788.9 602 65.0
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.9e-222 776.2 601 65.1
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 4.2e-222 775.0 602 64.8
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 5.1e-220 768.1 604 62.9
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.3e-217 758.1 604 64.4
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 2.9e-215 752.3 603 63.7
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 8.4e-215 750.7 605 61.8
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.1e-213 746.1 603 63.7
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.7e-213 745.7 603 63.3
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.8e-212 743.0 603 63.2
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.8e-212 743.0 621 62.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.1e-212 741.5 603 62.9
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 5.7e-211 738.0 607 61.4
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 5.7e-211 738.0 607 61.6
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.8e-210 735.7 609 61.2
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 2.6e-208 729.2 603 58.5
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.6e-208 729.2 609 60.3
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.7e-207 726.5 609 59.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 3.8e-207 725.3 604 60.9
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 5.0e-207 724.9 610 59.8
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.2e-205 720.3 608 59.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.6e-205 718.8 606 59.1
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 3.6e-205 718.8 605 59.2
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.5e-203 713.4 601 59.2
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 4.3e-203 711.8 604 59.4
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 5.7e-203 711.4 606 58.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 7.4e-203 711.1 604 59.6
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.3e-202 710.3 629 57.7
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 2.2e-202 709.5 605 60.0
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 2.8e-202 709.1 604 59.4
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.8e-201 706.4 679 54.3
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.8e-201 706.4 607 59.6
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 3.1e-201 705.7 604 58.8
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.1e-201 705.7 605 60.7
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 3.1e-201 705.7 604 59.3
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 3.1e-201 705.7 667 54.4
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 6.9e-201 704.5 602 59.3
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 6.9e-201 704.5 604 57.9
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 9.1e-201 704.1 602 58.6
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 9.1e-201 704.1 605 58.3
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 4.5e-200 701.8 606 59.9
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 5.9e-200 701.4 605 56.9
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.0e-199 700.7 605 58.3
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 3.8e-199 698.7 608 59.9
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 8.5e-199 697.6 605 56.9
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 8.5e-199 697.6 603 59.0
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.2e-198 695.7 603 58.0
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.6e-197 693.3 604 59.6
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.7e-197 692.6 604 58.1
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 4.7e-197 691.8 604 58.1
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 4.7e-197 691.8 601 58.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.0e-196 690.6 604 58.1
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 3.0e-196 689.1 634 55.2
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.4e-195 685.3 607 58.6
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.2e-194 682.9 604 56.0
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 2.2e-194 682.9 619 56.5
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 8.2e-194 681.0 609 58.8
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.4e-193 680.2 605 57.7
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.2e-192 677.2 605 56.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 7.7e-192 674.5 639 54.8
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.9e-191 672.5 604 57.0
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 8.5e-191 671.0 604 56.8
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 1.5e-190 670.2 625 55.5
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.9e-190 669.8 606 57.3
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 4.2e-190 668.7 605 57.4
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.2e-190 668.7 603 56.9
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 7.2e-190 667.9 605 55.7
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.6e-189 666.8 610 57.0
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 3.6e-189 665.6 605 57.4
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.0e-188 664.1 604 56.0
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 1.8e-188 663.3 606 56.6
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.8e-188 663.3 606 56.9
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.8e-188 663.3 606 56.9
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 5.2e-188 661.8 601 56.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 6.7e-188 661.4 606 56.9
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 3.3e-187 659.1 604 57.0
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 4.4e-187 658.7 609 56.5
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 4.4e-187 658.7 603 55.9
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 4.4e-187 658.7 607 55.7
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 2.8e-186 656.0 601 56.4
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.1e-185 654.1 605 55.4
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.4e-185 653.7 603 56.1
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.4e-185 652.9 610 55.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.6e-184 650.2 606 56.3
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.3e-183 647.1 564 59.4
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 2.9e-183 646.0 611 56.3
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 6.5e-183 644.8 605 54.9
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 9.4e-182 641.0 604 54.5
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 8.0e-181 637.9 549 58.3
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 3.5e-176 622.5 612 52.5
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 7.7e-176 621.3 604 54.6
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 7.7e-176 621.3 611 53.2
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 5.0e-175 618.6 566 56.2
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 6.5e-175 618.2 608 53.5
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 8.5e-175 617.8 607 54.2
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 6.8e-172 608.2 568 54.9
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.7e-170 603.6 512 60.5
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.1e-169 599.4 586 52.9
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.2e-168 597.4 606 53.0
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 5.5e-166 588.6 609 50.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 6.1e-157 558.5 421 66.7
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 5.8e-155 552.0 610 49.0
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 9.2e-153 544.7 538 55.2
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.7e-152 543.1 535 55.1
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 4.9e-146 522.3 475 56.6
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 4.1e-145 519.2 430 62.1
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.6e-144 517.3 633 45.8
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-143 514.2 533 52.3
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.8e-140 503.8 558 51.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 8.4e-130 468.4 631 42.6
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 3.8e-122 443.0 398 58.3
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.1e-117 425.2 584 41.4
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.4e-116 424.5 606 41.6
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.4e-116 423.7 280 77.1
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.4e-108 397.9 607 40.7
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 3.1e-108 396.7 614 38.3
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 9.3e-97 358.6 313 56.5
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.1e-95 352.8 630 36.8
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 1.5e-94 351.3 411 50.4
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 4.5e-91 339.7 249 66.7
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.1e-89 335.1 302 57.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 2.6e-78 297.4 418 44.3
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.3e-77 295.0 625 33.3
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.7e-71 272.7 371 45.0
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.0e-67 261.2 250 56.8
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.2e-54 218.8 287 46.7
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 2.8e-53 214.2 167 64.7
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 4.0e-47 193.7 566 31.1
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.2e-46 192.2 131 61.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 6.4e-45 186.4 293 37.9
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 6.8e-39 166.4 134 61.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 5.8e-38 163.3 128 65.6
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 7.5e-38 162.9 130 53.8
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.2e-37 161.4 297 35.4
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.6e-32 145.2 116 66.4
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 2.1e-32 144.8 299 33.4
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.4e-29 133.3 135 45.2
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 2.7e-27 127.9 871 23.9
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.8e-24 117.9 80 73.8
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.2e-22 112.5 94 54.3
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 2.2e-21 108.2 80 58.8
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.1e-20 105.9 75 69.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.1e-15 87.8 88 45.5
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.6e-11 75.5 102 41.2
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.5e-09 68.9 42 71.4
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.5e-09 68.9 42 71.4
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 3.3e-09 67.8 55 49.1
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 9.6e-09 66.2 39 74.4
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 4.8e-08 63.9 39 71.8
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 6.2e-08 63.5 59 52.5
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 6.2e-08 63.5 59 52.5
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 6.9e-07 60.1 35 82.9
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.2e-06 59.3 57 47.4


User provided reference genes

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